C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SWI/SNF related matrix associated, actin dependent regulator of chromatin, subfamily a-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000047615 Smarcal1-001 ENSMUSG00000039354 10090 + 1:72583251-72633134 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000047615
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000047615 6.057±1.98 6.883±1.63 11.875±0.31 10.958±1.84 4.576±1.68 3.189±1.15 4.284±1.56 4.544±1.38 3.500±1.45 4.450±1.47 6.526±0.25 8.613±4.51 5.925±1.90 2.749±1.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000AN CIL_0000AN_0003 CGP 1:72427112-72633134

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000733 IEA DNA strand renaturation
GO:0003677 IEA DNA binding
GO:0004386 IEA helicase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 ISS nucleus
GO:0005662 ISS DNA replication factor A complex
GO:0006200 IDA:ISS ATP catabolic process
GO:0006259 ISS DNA metabolic process
GO:0006357 ISS regulation of transcription from RNA polymerase II promoter
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0008094 IDA:ISS DNA-dependent ATPase activity
GO:0016568 IEA chromatin modification
GO:0031297 ISS replication fork processing
GO:0035861 ISS site of double-strand break
GO:0036310 ISS annealing helicase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000357276 SMARCAL1-001 protein_coding Homo_sapiens 0 1864
ENST00000358207 SMARCAL1-003 protein_coding Homo_sapiens 0 1858
ENST00000392128 SMARCAL1-002 protein_coding Homo_sapiens 0 1171
ENST00000425815 SMARCAL1-005 protein_coding Homo_sapiens 4e-32 141
ENST00000430374 SMARCAL1-004 protein_coding Homo_sapiens 0 230
ENST00000434435 SMARCAL1-007 protein_coding Homo_sapiens 0 230
ENST00000444508 SMARCAL1-006 protein_coding Homo_sapiens 0 230

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