C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RIKEN cDNA 5330417C22 gene
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048012 5330417C22Rik-201 ENSMUSG00000040412 10090 - 3:108458069-108536517 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000048012
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000048012 0.253±0.25 0.866±0.29 0.085±0.03 1.057±0.22 0.248±0.09 31.502±1.90 0.223±0.20 0.048±0.01 0.056±0.03 13.234±0.51 2.002±1.21 0.243±0.34 36.372±15.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099A CIL_00099A_0002 VISTA 3:108089934-108692442
CIL_00098X CIL_00098X_0002 VISTA 3:108109603-108712500

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005764 IEA lysosome
GO:0005768 IEA endosome
GO:0005770 IEA late endosome
GO:0005794 IEA Golgi apparatus
GO:0005802 IEA trans-Golgi network
GO:0005886 IEA plasma membrane
GO:0005887 IEA integral component of plasma membrane
GO:0006914 IEA autophagy
GO:0009267 IEA cellular response to starvation
GO:0016021 IEA integral component of membrane
GO:0016236 IEA macroautophagy
GO:0044090 IEA positive regulation of vacuole organization
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome
GO:2000786 IEA positive regulation of autophagic vacuole assembly
GO:2001240 IEA negative regulation of extrinsic apoptotic signaling pathway in absence of ligand

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369936 KIAA1324-001 retained_intron Homo_sapiens 0 2459
ENST00000369938 KIAA1324-003 processed_transcript Homo_sapiens 0 2459
ENST00000369939 KIAA1324-002 protein_coding Homo_sapiens 0 3356
ENST00000457623 KIAA1324-006 protein_coding Homo_sapiens 0 2124
ENST00000464345 KIAA1324-005 retained_intron Homo_sapiens 2e-33 147
ENST00000490758 KIAA1324-011 retained_intron Homo_sapiens 0 649
ENST00000526264 KIAA1324-015 protein_coding Homo_sapiens 0 222
ENST00000527996 KIAA1324-009 nonsense_mediated_decay Homo_sapiens 0 3260
ENST00000529753 KIAA1324-008 protein_coding Homo_sapiens 0 2333
ENST00000531664 KIAA1324-013 protein_coding Homo_sapiens 0 220
ENST00000533147 KIAA1324-012 protein_coding Homo_sapiens 0 222
ENST00000534476 KIAA1324-014 protein_coding Homo_sapiens 0 220

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