C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ATPase, Ca++ transporting, plasma membrane 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000048953 Atp2b4-201 ENSMUSG00000026463 10090 - 1:133702674-133753747 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonHeartMuscleOvaryPlacentaTestisENSMUST00000048953
Transcript ID Bladder Brain Colon Heart Muscle Ovary Placenta Testis
ENSMUST00000048953 59.720±10.68 4.251±4.17 3.190±0.76 0.465±0.00 0.452±0.02 3.093±0.38 3.247±0.00 1.888±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008W2 CIL_0008W2_0002 VISTA 1:133249313-133850886
CIL_00096T CIL_00096T_0002 VISTA 1:133444227-134045719
CIL_0005VX CIL_0005VX_0002 CGP 1:133699457-133907999

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005388 IEA calcium-transporting ATPase activity
GO:0005524 IEA ATP binding
GO:0005887 TAS integral component of plasma membrane
GO:0006816 TAS calcium ion transport
GO:0008152 IEA metabolic process
GO:0017080 IMP sodium channel regulator activity
GO:0043234 IDA protein complex
GO:0046872 IEA metal ion binding
GO:0070588 IEA calcium ion transmembrane transport
GO:0097110 IPI scaffold protein binding
GO:1902083 NAS negative regulation of peptidyl-cysteine S-nitrosylation
GO:1902305 IC regulation of sodium ion transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263519 ATP2B3-201 protein_coding Homo_sapiens 0 1458
ENST00000341360 ATP2B4-002 protein_coding Homo_sapiens 0 3930
ENST00000349466 ATP2B3-002 protein_coding Homo_sapiens 0 1458
ENST00000352432 ATP2B2-001 protein_coding Homo_sapiens 0 1158
ENST00000357681 ATP2B4-001 protein_coding Homo_sapiens 0 3783
ENST00000359149 ATP2B3-006 protein_coding Homo_sapiens 0 1459
ENST00000360273 ATP2B2-201 protein_coding Homo_sapiens 0 1158
ENST00000367218 ATP2B4-201 protein_coding Homo_sapiens 0 3947
ENST00000370186 ATP2B3-001 protein_coding Homo_sapiens 0 1153
ENST00000383800 ATP2B2-002 protein_coding Homo_sapiens 0 1158
ENST00000393842 ATP2B3-004 protein_coding Homo_sapiens 0 1153
ENST00000397077 ATP2B2-005 protein_coding Homo_sapiens 0 1158
ENST00000452124 ATP2B2-003 protein_coding Homo_sapiens 0 1419
ENST00000460129 ATP2B2-004 nonsense_mediated_decay Homo_sapiens 0 1166
ENST00000460549 ATP2B3-003 processed_transcript Homo_sapiens 0 261
ENST00000484746 ATP2B4-003 nonsense_mediated_decay Homo_sapiens 0 556

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