C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: potassium voltage-gated channel, shaker-related subfamily, beta member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049230 Kcnab1-001 ENSMUSG00000027827 10090 + 3:65109384-65378219 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonKidneyLiverLungMuscleOvaryPlacentaENSMUST00000049230
Transcript ID Adipose Adrenal Bladder Brain Colon Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000049230 0.867±0.55 0.300±0.18 0.398±0.00 6.960±8.50 0.287±0.15 0.081±0.02 0.064±0.02 0.112±0.03 0.615±0.31 2.258±1.09 0.097±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007F8 CIL_0007F8_0002 CGP 3:64690660-65378223
CIL_000667 CIL_000667_0004 CGP 3:65109384-65392623

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005249 IEA voltage-gated potassium channel activity
GO:0005515 IPI protein binding
GO:0005737 IEA cytoplasm
GO:0007611 IMP learning or memory
GO:0008076 IC voltage-gated potassium channel complex
GO:0071805 IEA potassium ion transmembrane transport
GO:1901016 IMP regulation of potassium ion transmembrane transporter activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000302490 KCNAB1-001 protein_coding Homo_sapiens 0 2213
ENST00000389634 KCNAB1-006 protein_coding Homo_sapiens 0 837
ENST00000389636 KCNAB1-003 protein_coding Homo_sapiens 0 990
ENST00000461717 KCNAB1-013 processed_transcript Homo_sapiens 0 553
ENST00000471742 KCNAB1-004 protein_coding Homo_sapiens 0 1520
ENST00000472028 KCNAB1-009 protein_coding Homo_sapiens 0 418
ENST00000475456 KCNAB1-010 protein_coding Homo_sapiens 0 580
ENST00000476362 KCNAB1-012 processed_transcript Homo_sapiens 0 279
ENST00000477912 KCNAB1-007 processed_transcript Homo_sapiens 0 457
ENST00000478609 KCNAB1-008 retained_intron Homo_sapiens 2e-32 143
ENST00000489036 KCNAB1-011 nonsense_mediated_decay Homo_sapiens 0 486
ENST00000490337 KCNAB1-002 protein_coding Homo_sapiens 0 1511
ENST00000496923 KCNAB1-014 processed_transcript Homo_sapiens 5e-28 128
ENST00000497291 KCNAB1-005 processed_transcript Homo_sapiens 0 1378
ENST00000618897 KCNAB1-201 protein_coding Homo_sapiens 0 1118

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