C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: clathrin, light polypeptide (Lcb)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000049575 Cltb-003 ENSMUSG00000047547 10090 - 13:54593585-54611292 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000049575
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000049575 15.412±5.55 23.626±3.57 20.458±3.31 60.135±51.70 22.283±3.32 52.709±6.83 16.566±6.11 32.239±5.41 11.566±5.70 34.478±2.31 27.668±4.58 11.349±2.85 37.637±21.18 4.363±2.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00098R CIL_00098R_0002 VISTA 13:54491283-55092527
CIL_0002N8 CIL_0002N8_0002 CGP 13:54590207-54611344
CIL_0002N7 CIL_0002N7_0002 CGP 13:54592401-54664068

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 IEA structural molecule activity
GO:0005802 IDA trans-Golgi network
GO:0005886 IDA plasma membrane
GO:0006886 IEA intracellular protein transport
GO:0008150 ND biological_process
GO:0016192 IEA vesicle-mediated transport
GO:0030118 ISS clathrin coat
GO:0030130 IEA clathrin coat of trans-Golgi network vesicle
GO:0030132 IEA clathrin coat of coated pit
GO:0060170 IDA ciliary membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000310418 CLTB-001 protein_coding Homo_sapiens 0 1053
ENST00000345807 CLTB-002 protein_coding Homo_sapiens 0 573
ENST00000502877 CLTB-005 protein_coding Homo_sapiens 0 307
ENST00000508425 CLTB-006 protein_coding Homo_sapiens 0 265
ENST00000510734 CLTB-003 nonsense_mediated_decay Homo_sapiens 0 276

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