C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily C, member 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000050433 Trpc6-201 ENSMUSG00000031997 10090 + 9:8544196-8680565 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050433
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050433 0.290±0.08 0.534±0.17 0.283±0.00 1.005±1.28 3.060±0.77 0.297±0.11 0.062±0.04 0.111±0.06 0.631±0.39 5.653±0.55 0.036±0.01 1.968±0.66 0.299±0.32 0.034±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003T4 CIL_0003T4_0002 CGP 9:8544196-8968611

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IDA ion channel activity
GO:0005261 IEA cation channel activity
GO:0005262 IEA calcium channel activity
GO:0005515 IPI protein binding
GO:0005886 ISO plasma membrane
GO:0005887 ISA integral component of plasma membrane
GO:0007204 IDA positive regulation of cytosolic calcium ion concentration
GO:0007568 IEA aging
GO:0015279 IDA store-operated calcium channel activity
GO:0032414 ISO positive regulation of ion transmembrane transporter activity
GO:0036057 IDA slit diaphragm
GO:0051928 ISO positive regulation of calcium ion transport
GO:0070301 IEA cellular response to hydrogen peroxide
GO:0070588 IEA calcium ion transmembrane transport
GO:0070679 IEA inositol 1,4,5 trisphosphate binding
GO:0071456 IEA cellular response to hypoxia

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000344327 TRPC6-001 protein_coding Homo_sapiens 0 3362
ENST00000348423 TRPC6-002 protein_coding Homo_sapiens 0 1921
ENST00000360497 TRPC6-003 protein_coding Homo_sapiens 0 1914
ENST00000417933 RP11-70K10.2-001 processed_pseudogene Homo_sapiens 0 392
ENST00000421233 TRPC6P-001 processed_pseudogene Homo_sapiens 0 918
ENST00000426484 AC009784.4-001 processed_pseudogene Homo_sapiens 0 420
ENST00000491593 RP11-632K21.3-001 processed_pseudogene Homo_sapiens 0 787
ENST00000503772 RP11-12P19.2-001 processed_pseudogene Homo_sapiens 0 368
ENST00000509592 CTB-78O21.1-001 processed_pseudogene Homo_sapiens 0 867
ENST00000526713 TRPC6-007 processed_transcript Homo_sapiens 5e-27 124
ENST00000527240 TRPC6-006 retained_intron Homo_sapiens 0 257
ENST00000532133 TRPC6-004 protein_coding Homo_sapiens 0 1786

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