C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group nucleosomal binding domain 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000050884 Hmgn1-001 ENSMUSG00000040681 10090 - 16:96120618-96127729 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000050884
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000050884 27.064±14.21 21.921±13.24 52.787±14.68 45.437±22.62 17.333±4.55 16.419±6.63 7.609±0.74 20.801±3.99 16.548±6.90 34.824±3.08 4.051±0.50 67.280±35.53 103.668±31.56 7.833±2.60

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UB CIL_0007UB_0002 VISTA 16:95547910-96149564
CIL_0004KG CIL_0004KG_0002 CGP 16:95992092-96127729
CIL_0003GM CIL_0003GM_0002 CGP 16:96120618-96157852

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000720 IMP pyrimidine dimer repair by nucleotide-excision repair
GO:0000785 IEA chromatin
GO:0003682 IDA chromatin binding
GO:0005634 IDA nucleus
GO:0005737 IEA cytoplasm
GO:0006283 IMP transcription-coupled nucleotide-excision repair
GO:0006325 IMP chromatin organization
GO:0006357 IMP regulation of transcription from RNA polymerase II promoter
GO:0010224 IMP response to UV-B
GO:0010225 IDA response to UV-C
GO:0031492 IEA nucleosomal DNA binding
GO:0040034 IGI regulation of development, heterochronic
GO:0048597 IMP post-embryonic camera-type eye morphogenesis
GO:0050678 IMP regulation of epithelial cell proliferation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000288344 HMGN1-004 nonsense_mediated_decay Homo_sapiens 0 508
ENST00000303758 HMGN1P35-001 processed_pseudogene Homo_sapiens 0 405
ENST00000380747 HMGN1-013 protein_coding Homo_sapiens 0 453
ENST00000380748 HMGN1-018 protein_coding Homo_sapiens 0 544
ENST00000380749 HMGN1-001 protein_coding Homo_sapiens 0 590
ENST00000419378 HMGN1-015 nonsense_mediated_decay Homo_sapiens 0 486
ENST00000431390 HMGN1-002 nonsense_mediated_decay Homo_sapiens 0 508
ENST00000436324 HMGN1-009 nonsense_mediated_decay Homo_sapiens 0 512
ENST00000443046 HMGN1-017 nonsense_mediated_decay Homo_sapiens 0 222
ENST00000482192 HMGN1-008 processed_transcript Homo_sapiens 0 460
ENST00000485550 HMGN1-021 processed_transcript Homo_sapiens 0 368
ENST00000486741 HMGN1-006 retained_intron Homo_sapiens 0 508
ENST00000489072 HMGN1-012 processed_transcript Homo_sapiens 0 466
ENST00000490032 HMGN1-010 processed_transcript Homo_sapiens 0 261
ENST00000492280 HMGN1-003 retained_intron Homo_sapiens 0 508
ENST00000495036 CPED1-002 processed_transcript Homo_sapiens 0 433
ENST00000556083 ACTN1-008 retained_intron Homo_sapiens 0 547

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