C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lethal giant larvae homolog 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052346 Llgl1-001 ENSMUSG00000020536 10090 + 11:60699723-60714186 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungOvaryTestisENSMUST00000052346
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Ovary Testis
ENSMUST00000052346 14.988±0.68 18.713±4.93 12.352±5.10 12.584±2.77 10.643±1.69 4.729±0.18 3.786±1.01 11.391±3.17 22.781±4.91 2.010±0.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000E2 CIL_0000E2_0002 CGP 11:60536381-60714186
CIL_0005J2 CIL_0005J2_0002 CGP 11:60699723-60727263

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000137 ISS Golgi cis cisterna
GO:0005097 ISS Rab GTPase activator activity
GO:0005737 IDA cytoplasm
GO:0005856 IDA cytoskeleton
GO:0006461 IEA protein complex assembly
GO:0006887 IEA exocytosis
GO:0006893 ISS Golgi to plasma membrane transport
GO:0007409 ISS axonogenesis
GO:0007420 TAS brain development
GO:0019901 IEA protein kinase binding
GO:0030424 ISS axon
GO:0030864 IEA cortical actin cytoskeleton
GO:0030866 IEA cortical actin cytoskeleton organization
GO:0031901 ISS early endosome membrane
GO:0032588 ISS trans-Golgi network membrane
GO:0032851 ISS positive regulation of Rab GTPase activity
GO:0035090 IMP maintenance of apical/basal cell polarity
GO:0035748 IDA myelin sheath abaxonal region

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000146700 llgl1-003 protein_coding Danio_rerio 0 610
ENSDART00000003511 llgl1-201 protein_coding Danio_rerio 0 595
ENST00000316843 LLGL1-001 protein_coding Homo_sapiens 0 3258
ENST00000327031 FLII-001 protein_coding Homo_sapiens 0.000000003 69
ENST00000479155 LLGL1-002 retained_intron Homo_sapiens 0 959
ENST00000545457 FLII-019 protein_coding Homo_sapiens 0.000002 60
ENST00000577398 FLII-030 protein_coding Homo_sapiens 0.0000000006 69
ENST00000578558 FLII-026 protein_coding Homo_sapiens 0.000000002 69
ENST00000581858 FLII-034 nonsense_mediated_decay Homo_sapiens 0.0000000004 69
ENST00000621229 LLGL1-201 protein_coding Homo_sapiens 0 3144

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