C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: piggyBac transposable element derived 5
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052580 Pgbd5-201 ENSMUSG00000050751 10090 - 8:124369049-124433936 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052580
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052580 1.139±0.29 1.303±0.10 8.644±9.02 0.044±0.01 0.904±0.57 0.176±0.02 0.081±0.01 0.132±0.03 0.063±0.04 6.391±2.65 0.051±0.04 3.098±1.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008A0 CIL_0008A0_0002 VISTA 8:123980149-124582109
CIL_000612 CIL_000612_0002 CGP 8:124231391-124439658
CIL_0007WK CIL_0007WK_0002 VISTA 8:124343702-124945898
CIL_00060Z CIL_00060Z_0002 CGP 8:124369049-124552008

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000391860 PGBD5-001 protein_coding Homo_sapiens 0 1574
ENST00000525115 PGBD5-002 protein_coding Homo_sapiens 0 1491
ENST00000530424 PGBD5-003 processed_transcript Homo_sapiens 0 416

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