C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: snail family zinc finger 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000052631 Snai1-001 ENSMUSG00000042821 10090 + 2:167538195-167542814 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000052631
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000052631 15.276±7.69 10.013±0.58 13.661±3.44 2.092±1.58 13.564±5.52 8.073±0.79 2.538±0.78 3.786±0.65 1.188±0.53 23.242±2.92 0.577±0.14 15.925±7.27 25.351±18.98 2.317±1.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008I4 CIL_0008I4_0002 VISTA 2:167024358-167627099
CIL_00087E CIL_00087E_0002 VISTA 2:167269881-167871243
CIL_0006FM CIL_0006FM_0002 CGP 2:167492645-167542814
CIL_0001TN CIL_0001TN_0002 CGP 2:167538195-167632095

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IMP negative regulation of transcription from RNA polymerase II promoter
GO:0000977 IDA RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001078 IDA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001227 IDA RNA polymerase II transcription regulatory region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001649 IEA osteoblast differentiation
GO:0001707 IMP mesoderm formation
GO:0001837 IDA epithelial to mesenchymal transition
GO:0003198 ISS epithelial to mesenchymal transition involved in endocardial cushion formation
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006357 IGI regulation of transcription from RNA polymerase II promoter
GO:0007498 IMP mesoderm development
GO:0010718 IMP positive regulation of epithelial to mesenchymal transition
GO:0010957 IEA negative regulation of vitamin D biosynthetic process
GO:0016477 IGI cell migration
GO:0019900 IEA kinase binding
GO:0030335 IMP positive regulation of cell migration
GO:0031069 IDA hair follicle morphogenesis
GO:0043518 IEA negative regulation of DNA damage response, signal transduction by p53 class mediator
GO:0043565 IDA sequence-specific DNA binding
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding
GO:0060021 IGI palate development
GO:0060536 IGI cartilage morphogenesis
GO:0060707 IDA trophoblast giant cell differentiation
GO:0060806 IDA negative regulation of cell differentiation involved in embryonic placenta development
GO:0060972 IMP left/right pattern formation
GO:0061314 IGI Notch signaling involved in heart development
GO:1902230 IEA negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage
GO:2000810 IEA regulation of tight junction assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000244050 SNAI1-001 protein_coding Homo_sapiens 0 822

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