C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ubiquitin specific peptidase 42
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000053287 Usp42-001 ENSMUSG00000051306 10090 - 5:143710325-143732280 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000053287
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000053287 2.215±0.89 1.370±0.48 1.644±0.76 4.583±2.69 1.697±0.61 1.675±0.32 0.751±0.13 1.645±0.14 1.168±0.30 2.256±0.37 1.445±0.09 2.583±1.14 2.716±1.55 7.042±3.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006RJ CIL_0006RJ_0002 CGP 5:143622447-143732280
CIL_0005BI CIL_0005BI_0002 CGP 5:143710325-143904256

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004843 IDA ubiquitin-specific protease activity
GO:0005515 IEA protein binding
GO:0005575 ND cellular_component
GO:0006511 IEA ubiquitin-dependent protein catabolic process
GO:0007283 TAS spermatogenesis
GO:0016579 IDA protein deubiquitination
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000306177 USP42-005 protein_coding Homo_sapiens 0 2025
ENST00000404008 USP42-004 nonsense_mediated_decay Homo_sapiens 0 743
ENST00000426246 USP42-006 protein_coding Homo_sapiens 0 1330
ENST00000465073 USP42-008 protein_coding Homo_sapiens 0 1253
ENST00000479544 USP42-007 retained_intron Homo_sapiens 0 1925
ENST00000521713 USP42-009 nonsense_mediated_decay Homo_sapiens 0 1072

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