C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle transport through interaction with t-SNAREs 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000055262 Vti1b-001 ENSMUSG00000021124 10090 - 12:79156017-79172667 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000055262
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000055262 12.072±1.17 40.383±1.72 30.231±8.88 6.993±1.27 12.244±3.01 11.106±0.82 11.135±2.99 7.071±4.21 11.694±2.34 16.598±3.04 9.264±7.32 27.608±3.35 11.130±3.25

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002CL CIL_0002CL_0002 CGP 12:79080673-79156301
CIL_0001KL CIL_0001KL_0003 CGP 12:79130777-79172667
CIL_0001MK CIL_0001MK_0002 CGP 12:79156017-79192293

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000149 ISO SNARE binding
GO:0005515 IPI protein binding
GO:0005765 IEA lysosomal membrane
GO:0005794 IDA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0008021 IEA synaptic vesicle
GO:0016192 IEA vesicle-mediated transport
GO:0031201 IEA SNARE complex
GO:0031902 IEA late endosome membrane
GO:0043025 IEA neuronal cell body
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000216456 VTI1B-002 nonsense_mediated_decay Homo_sapiens 0 730
ENST00000394154 VTI1BP2-001 processed_pseudogene Homo_sapiens 0 723
ENST00000427516 VTI1BP4-001 processed_pseudogene Homo_sapiens 0 344
ENST00000486325 VTI1BP1-001 processed_pseudogene Homo_sapiens 0 765
ENST00000550220 VTI1BP3-001 processed_pseudogene Homo_sapiens 0 257
ENST00000553306 RP11-1012A1.4-001 nonsense_mediated_decay Homo_sapiens 0 224
ENST00000553582 RP11-1012A1.4-002 retained_intron Homo_sapiens 1e-38 163
ENST00000553619 VTI1B-004 retained_intron Homo_sapiens 0 357
ENST00000554493 RP11-1012A1.4-004 processed_transcript Homo_sapiens 1e-38 163
ENST00000554659 VTI1B-001 protein_coding Homo_sapiens 0 1153
ENST00000555543 VTI1B-003 nonsense_mediated_decay Homo_sapiens 0 318
ENST00000557564 RP11-1012A1.4-003 protein_coding Homo_sapiens 3e-38 161

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