C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: interferon beta 1, fibroblast
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000055671 Ifnb1-001 ENSMUSG00000048806 10090 - 4:88522025-88522774 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainENSMUST00000055671
Transcript ID Bladder Brain
ENSMUST00000055671 0.023±0.00 0.012±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00074B CIL_00074B_0002 CGP 4:88396144-88522774

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002250 IDA adaptive immune response
GO:0002286 IBA T cell activation involved in immune response
GO:0002312 IEA B cell activation involved in immune response
GO:0002323 IBA natural killer cell activation involved in immune response
GO:0005125 IDA cytokine activity
GO:0005132 IBA type I interferon receptor binding
GO:0005576 TAS extracellular region
GO:0005615 IDA extracellular space
GO:0006959 IDA humoral immune response
GO:0019221 IBA cytokine-mediated signaling pathway
GO:0030183 IBA B cell differentiation
GO:0033141 IBA positive regulation of peptidyl-serine phosphorylation of STAT protein
GO:0035458 IEA cellular response to interferon-beta
GO:0042100 IBA B cell proliferation
GO:0042742 IDA defense response to bacterium
GO:0043330 IBA response to exogenous dsRNA
GO:0045071 IEA negative regulation of viral genome replication
GO:0045087 IBA innate immune response
GO:0045343 IBA regulation of MHC class I biosynthetic process
GO:0045581 IEA negative regulation of T cell differentiation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0051607 IDA defense response to virus
GO:0060337 IEA type I interferon signaling pathway
GO:0071359 IEP cellular response to dsRNA
GO:2000552 IEA negative regulation of T-helper 2 cell cytokine production
GO:2001235 IEA positive regulation of apoptotic signaling pathway

Homologs

No Homologs available.

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