C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: polyamine-modulated factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000056370 Pmf1-201 ENSMUSG00000028066 10090 - 3:88394143-88410316 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000056370
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000056370 14.932±0.68 33.241±6.10 9.361±0.40 10.734±6.61 16.984±8.81 23.409±2.49 8.038±2.05 12.802±1.49 33.316±12.89 10.338±0.23 7.851±0.55 36.289±10.69 29.133±16.80 10.757±1.99

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JO CIL_0008JO_0002 VISTA 3:87838105-88441065
CIL_0008P5 CIL_0008P5_0002 VISTA 3:88218217-88823366
CIL_000898 CIL_000898_0002 VISTA 3:88224783-88827970

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000444 ISS MIS12/MIND type complex
GO:0003713 TAS transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007059 ISS chromosome segregation
GO:0007067 IEA mitotic nuclear division
GO:0043522 IEA leucine zipper domain binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000320139 PMF1-BGLAP-002 protein_coding Homo_sapiens 0 248
ENST00000368273 PMF1-005 protein_coding Homo_sapiens 0 327
ENST00000368276 PMF1-BGLAP-001 protein_coding Homo_sapiens 0 246
ENST00000368277 PMF1-001 protein_coding Homo_sapiens 0 470
ENST00000368279 PMF1-002 protein_coding Homo_sapiens 0 248
ENST00000490491 PMF1-BGLAP-003 protein_coding Homo_sapiens 0 407
ENST00000497069 PMF1-004 nonsense_mediated_decay Homo_sapiens 0 405
ENST00000606952 PMF1-010 retained_intron Homo_sapiens 0 263

Loading