| Transcript ID | Bladder | Liver | Placenta |
|---|---|---|---|
| ENSMUST00000057343 | 21.296±0.28 | 41.087±8.69 | 23.764±9.91 |
C-It-Loci: A knowledge database for tissue-enriched loci.
Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main
Transcript Info |
||||||
| Description: | polypyrimidine tract binding protein 1 | |||||
|---|---|---|---|---|---|---|
| Transcript Accession | Transcript Name | Contained in Gene | Tax ID | Strand | Position | Biotype |
ENSMUST00000057343  |
Ptbp1-008 |
ENSMUSG00000006498 |
10090 | + |
10:79854652-79863424  |
nonsense_mediated_decay |
Expression Patterns
|
Conserved Regions | |||
|---|---|---|---|
| Region ID | Sub-Region | Region Type | Position |
| CIL_0008XG | CIL_0008XG_0002 | VISTA | 10:79539861-80142369 |
| CIL_00051Q | CIL_00051Q_0002 | CGP | 10:79821021-79864771 |
| CIL_00008B | CIL_00008B_0002 | CGP | 10:79854427-79874634 |
Gene Ontology | ||
|---|---|---|
| GO ID | Evidence Type | GO Description |
| GO:0000166 | IEA | nucleotide binding |
| GO:0003723 | IEA | RNA binding |
| GO:0005515 | IPI | protein binding |
| GO:0005634 | IDA | nucleus |
| GO:0006397 | IEA | mRNA processing |
| GO:0048025 | IMP | negative regulation of mRNA splicing, via spliceosome |
Homologs | |||||
| ENSEMBL Accession | Gene Name | Biotype | Species | E-Value | Bit Score |
|
ENSDART00000017668
|
ptbp1a-001 | protein_coding | Danio_rerio | 0 | 399 |
|
ENST00000349038
|
PTBP1-003 | protein_coding | Homo_sapiens | 0 | 1157 |
|
ENST00000350092
|
PTBP1-019 | protein_coding | Homo_sapiens | 0 | 985 |
|
ENST00000356948
|
PTBP1-001 | protein_coding | Homo_sapiens | 0 | 1074 |
|
ENST00000394601
|
PTBP1-002 | protein_coding | Homo_sapiens | 0 | 1055 |
|
ENST00000554374
|
PTBP1P-001 | processed_pseudogene | Homo_sapiens | 0 | 863 |
|
ENST00000585856
|
PTBP1-007 | retained_intron | Homo_sapiens | 0 | 760 |
|
ENST00000585932
|
PTBP1-014 | nonsense_mediated_decay | Homo_sapiens | 0 | 841 |
|
ENST00000585956
|
PTBP1-016 | protein_coding | Homo_sapiens | 0 | 459 |
|
ENST00000586481
|
PTBP1-013 | protein_coding | Homo_sapiens | 0 | 505 |
|
ENST00000586944
|
PTBP1-004 | retained_intron | Homo_sapiens | 0 | 1074 |
|
ENST00000587136
|
PTBP1-008 | retained_intron | Homo_sapiens | 0 | 294 |
|
ENST00000587191
|
PTBP1-017 | protein_coding | Homo_sapiens | 0 | 399 |
|
ENST00000589575
|
PTBP1-006 | protein_coding | Homo_sapiens | 0 | 791 |
|
ENST00000590887
|
PTBP1-005 | retained_intron | Homo_sapiens | 0 | 244 |
|
ENST00000592113
|
PTBP1-018 | retained_intron | Homo_sapiens | 0 | 551 |
|
ENST00000592804
|
PTBP1-010 | retained_intron | Homo_sapiens | 0 | 244 |
|
ENST00000621737
|
PTBP1-015 | nonsense_mediated_decay | Homo_sapiens | 0 | 1271 |
