C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: neurexin III
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057634 Nrxn3-002 ENSMUSG00000066392 10090 + 12:88953399-90333060 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004U1 CIL_0004U1_0002 CGP 12:88360554-90334935
CIL_0008FT CIL_0008FT_0002 VISTA 12:88683898-89284926
CIL_0004U0 CIL_0004U0_0002 CGP 12:88722876-90738438

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005246 IGI calcium channel regulator activity
GO:0005515 IPI protein binding
GO:0007155 IEA cell adhesion
GO:0007268 IGI synaptic transmission
GO:0007269 IGI neurotransmitter secretion
GO:0007416 IGI synapse assembly
GO:0016021 IEA integral component of membrane
GO:0042734 ISA presynaptic membrane
GO:0046872 IEA metal ion binding
GO:0051965 IEA positive regulation of synapse assembly
GO:0090129 IEA positive regulation of synapse maturation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000088179 nrxn3a-202 protein_coding Danio_rerio 0 1618
ENSDART00000156928 nrxn3a-001 protein_coding Danio_rerio 0 1546
ENSDART00000090934 nrxn3b-202 protein_coding Danio_rerio 0 1203
ENSDART00000127050 nrxn3b-203 protein_coding Danio_rerio 0 1203
ENSDART00000090646 nrxn3b-201 protein_coding Danio_rerio 0 1195
ENSDART00000149694 nrxn3b-001 protein_coding Danio_rerio 0 597
ENSDART00000087657 nrxn2a-201 protein_coding Danio_rerio 0 318
ENSDART00000141629 nrxn2a-001 protein_coding Danio_rerio 0 318
ENSDART00000064241 nrxn3a-201 protein_coding Danio_rerio 0 302
ENSDART00000153697 nrxn3a-003 protein_coding Danio_rerio 0 302
ENSDART00000154519 nrxn3a-002 nonsense_mediated_decay Danio_rerio 0 302
ENST00000265459 NRXN2-201 protein_coding Homo_sapiens 0 693
ENST00000281127 NRXN3-005 protein_coding Homo_sapiens 0 1214
ENST00000335750 NRXN3-201 protein_coding Homo_sapiens 0 3212
ENST00000377551 NRXN2-001 protein_coding Homo_sapiens 0 693
ENST00000377559 NRXN2-002 protein_coding Homo_sapiens 0 664
ENST00000409571 NRXN2-015 protein_coding Homo_sapiens 0 769
ENST00000428277 NRXN3-006 protein_coding Homo_sapiens 0 1829
ENST00000486057 NRXN2-009 processed_transcript Homo_sapiens 0 230
ENST00000553363 NRXN3-010 protein_coding Homo_sapiens 0 551
ENST00000553631 NRXN3-009 protein_coding Homo_sapiens 0 411
ENST00000554719 NRXN3-001 protein_coding Homo_sapiens 0 3661
ENST00000554738 NRXN3-002 nonsense_mediated_decay Homo_sapiens 0 4148
ENST00000555073 NRXN3-012 processed_transcript Homo_sapiens 0 374
ENST00000555387 NRXN3-007 nonsense_mediated_decay Homo_sapiens 0 1114
ENST00000556003 NRXN3-013 processed_transcript Homo_sapiens 0 494
ENST00000556088 NRXN3-008 retained_intron Homo_sapiens 0 455
ENST00000556496 NRXN3-003 retained_intron Homo_sapiens 0 3042
ENST00000557081 NRXN3-011 protein_coding Homo_sapiens 0 608
ENST00000557594 NRXN3-004 protein_coding Homo_sapiens 0 612

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