C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SAM domain and HD domain, 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057725 Samhd1-001 ENSMUSG00000027639 10090 - 2:157097533-157135265 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057725
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057725 5.947±1.17 2.677±1.25 11.618±3.07 2.299±0.91 9.251±4.60 4.051±1.04 2.062±0.35 2.618±0.94 4.176±2.90 14.494±4.04 3.130±0.73 7.545±2.10 5.574±2.53 1.194±0.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004XX CIL_0004XX_0002 CGP 2:157087055-157135265
CIL_0004ZW CIL_0004ZW_0002 CGP 2:157097533-157204534

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 ISS nucleic acid binding
GO:0003723 ISS RNA binding
GO:0005634 ISS nucleus
GO:0005886 IEA plasma membrane
GO:0006203 ISS dGTP catabolic process
GO:0008270 ISS zinc ion binding
GO:0008832 ISS dGTPase activity
GO:0032567 ISS dGTP binding
GO:0045087 IEA innate immune response
GO:0045088 ISS regulation of innate immune response
GO:0046061 ISS dATP catabolic process
GO:0051289 IEA protein homotetramerization
GO:0051607 ISS defense response to virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262878 SAMHD1-001 protein_coding Homo_sapiens 0 669

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