C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: bromodomain PHD finger transcription factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000057892 Bptf-201 ENSMUSG00000040481 10090 - 11:107033081-107131922 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000057892
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000057892 4.704±1.82 5.668±1.78 4.880±1.60 5.203±1.93 4.018±1.47 4.457±2.10 1.157±0.34 3.370±1.25 1.512±0.71 5.411±1.96 0.916±0.25 5.945±2.41 3.542±1.11 3.100±1.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000KI CIL_0000KI_0002 CGP 11:106988629-107132127

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001892 IMP embryonic placenta development
GO:0005634 IEA nucleus
GO:0005730 IEA nucleolus
GO:0005737 IEA cytoplasm
GO:0006200 IEA ATP catabolic process
GO:0006338 IEA chromatin remodeling
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007420 IEA brain development
GO:0007492 IMP endoderm development
GO:0008094 IEA DNA-dependent ATPase activity
GO:0008134 IEA transcription factor binding
GO:0008270 IEA zinc ion binding
GO:0009952 IMP anterior/posterior pattern specification
GO:0015630 IEA microtubule cytoskeleton
GO:0016589 IEA NURF complex
GO:0043565 IEA sequence-specific DNA binding
GO:0045893 IEA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000109601 bptf-201 protein_coding Danio_rerio 0 455
ENSDART00000154200 bptf-001 protein_coding Danio_rerio 0 366
ENST00000306378 BPTF-002 protein_coding Homo_sapiens 0 8776
ENST00000321892 BPTF-201 protein_coding Homo_sapiens 0 6920
ENST00000335221 BPTF-202 protein_coding Homo_sapiens 0 1578
ENST00000342579 BPTF-006 protein_coding Homo_sapiens 0 1762
ENST00000424123 BPTF-001 protein_coding Homo_sapiens 0 4255
ENST00000467104 BPTF-013 retained_intron Homo_sapiens 0 490
ENST00000543378 LRRC37B-006 protein_coding Homo_sapiens 9.99995e-41 172
ENST00000544778 BPTF-009 protein_coding Homo_sapiens 0 4244
ENST00000577770 BPTF-014 processed_transcript Homo_sapiens 0 309
ENST00000577837 BPTF-018 protein_coding Homo_sapiens 0 292
ENST00000578307 BPTF-007 retained_intron Homo_sapiens 0 628
ENST00000579173 BPTF-012 retained_intron Homo_sapiens 0 424
ENST00000579206 LRRC37B-008 protein_coding Homo_sapiens 6.02558e-44 182
ENST00000579209 RP11-927P21.5-001 unprocessed_pseudogene Homo_sapiens 0 545
ENST00000579873 RP11-583F2.1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 383
ENST00000580412 RP11-640N20.9-002 processed_transcript Homo_sapiens 0 350
ENST00000580465 BPTF-005 protein_coding Homo_sapiens 0 669
ENST00000581258 BPTF-004 protein_coding Homo_sapiens 0 669
ENST00000581370 LRRC37B-009 processed_transcript Homo_sapiens 2e-26 122
ENST00000582467 BPTF-010 protein_coding Homo_sapiens 0 497
ENST00000583342 LRRC37B-007 protein_coding Homo_sapiens 0 195
ENST00000583895 RP11-640N20.9-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 353
ENST00000583990 BPTF-017 protein_coding Homo_sapiens 0 291
ENST00000584931 BPTF-015 retained_intron Homo_sapiens 0 285

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