C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000058437 Rpl7-001 ENSMUSG00000043716 10090 - 1:16101295-16104662 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000058437
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000058437 103.218±50.10 7.914±0.95 443.342±22.61 125.589±70.65 48.451±12.84 52.905±15.43 12.554±0.00 42.668±12.68 283.569±216.79 76.090±0.00 85.849±17.78 69.003±13.51 249.326±187.13 15.372±8.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00011X CIL_00011X_0002 CGP 1:16065979-16104662
CIL_0005C3 CIL_0005C3_0003 CGP 1:16101295-16133734

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 ISO DNA binding
GO:0003729 ISO mRNA binding
GO:0003735 IC structural constituent of ribosome
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005925 IEA focal adhesion
GO:0006364 IEA rRNA processing
GO:0006412 IC translation
GO:0016020 IEA membrane
GO:0022625 IDA cytosolic large ribosomal subunit
GO:0030529 ISO ribonucleoprotein complex
GO:0042273 IEA ribosomal large subunit biogenesis
GO:0042803 ISO protein homodimerization activity
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000333817 RPL7P26-001 processed_pseudogene Homo_sapiens 0 749
ENST00000352983 RPL7-001 protein_coding Homo_sapiens 0 937
ENST00000396465 RPL7-003 protein_coding Homo_sapiens 0 902
ENST00000396466 RPL7-004 protein_coding Homo_sapiens 0 905
ENST00000396467 RPL7-002 protein_coding Homo_sapiens 0 905
ENST00000402913 RPL7P58-001 processed_pseudogene Homo_sapiens 0 695
ENST00000404151 RPL7P25-001 processed_pseudogene Homo_sapiens 0 595
ENST00000411964 RPL7P8-003 processed_pseudogene Homo_sapiens 0 586
ENST00000417407 RPL7P10-001 processed_pseudogene Homo_sapiens 0 693
ENST00000424827 RPL7P44-001 processed_pseudogene Homo_sapiens 0 736
ENST00000425095 RPL7P37-001 processed_pseudogene Homo_sapiens 0 693
ENST00000427639 RPL7P2-001 processed_pseudogene Homo_sapiens 0 283
ENST00000428803 RPL7P7-001 processed_pseudogene Homo_sapiens 0 667
ENST00000429441 RPL7P56-001 processed_pseudogene Homo_sapiens 0 590
ENST00000437151 RPL7P29-001 processed_pseudogene Homo_sapiens 0 569
ENST00000437586 RPL7P11-001 processed_pseudogene Homo_sapiens 0 630
ENST00000438336 RPL7P54-001 processed_pseudogene Homo_sapiens 0 560
ENST00000438600 RP11-62E14.2-001 processed_pseudogene Homo_sapiens 0 224
ENST00000444159 RPL7P33-001 processed_pseudogene Homo_sapiens 0 708
ENST00000444633 RPL7P36-001 processed_pseudogene Homo_sapiens 0 593
ENST00000446719 RPL7P12-001 processed_pseudogene Homo_sapiens 0 717
ENST00000446943 RPL7P35-001 processed_pseudogene Homo_sapiens 0 521
ENST00000447700 RPL7P59-001 processed_pseudogene Homo_sapiens 0 333
ENST00000449200 RPL7P52-001 processed_pseudogene Homo_sapiens 0 715
ENST00000450522 RPL7P55-001 processed_pseudogene Homo_sapiens 0 381
ENST00000457119 RPL7P32-001 processed_pseudogene Homo_sapiens 0 870
ENST00000461190 RPL7P15-001 processed_pseudogene Homo_sapiens 0 693
ENST00000461513 RPL7P48-001 processed_pseudogene Homo_sapiens 0 769
ENST00000468161 RPL7P1-001 processed_pseudogene Homo_sapiens 0 898
ENST00000468715 RPL7P9-001 processed_pseudogene Homo_sapiens 0 887
ENST00000471472 RPL7P5-001 processed_pseudogene Homo_sapiens 0 577
ENST00000478876 RPL7P43-001 processed_pseudogene Homo_sapiens 0 459
ENST00000479738 RPL7P16-001 processed_pseudogene Homo_sapiens 0 652
ENST00000480903 RPL7P6-001 processed_pseudogene Homo_sapiens 0 841
ENST00000485823 RPL7P41-001 processed_pseudogene Homo_sapiens 0 490
ENST00000487500 RPL7-008 processed_transcript Homo_sapiens 3e-40 169
ENST00000490532 RPL7P51-001 processed_pseudogene Homo_sapiens 0 523
ENST00000493052 RPL7P24-001 processed_pseudogene Homo_sapiens 0 693
ENST00000497299 RPL7P47-001 processed_pseudogene Homo_sapiens 0 608

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