C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: breast cancer metastasis-suppressor 1-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000059250 Brms1l-201 ENSMUSG00000012076 10090 + 12:55836366-55869735 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000059250
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000059250 9.732±2.33 8.471±0.81 14.382±1.72 21.292±3.60 8.073±2.00 3.602±1.35 7.577±0.58 6.597±1.29 5.521±4.56 11.159±2.22 4.569±0.98 12.703±3.97 17.644±3.34 6.931±1.64

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MF CIL_0008MF_0002 VISTA 12:55314270-55915258
CIL_0008ME CIL_0008ME_0002 VISTA 12:55343542-55944223
CIL_0007LS CIL_0007LS_0003 UCNEbase 12:55566857-57467023
CIL_00045N CIL_00045N_0002 CGP 12:55602929-55869735
CIL_0007WQ CIL_0007WQ_0002 VISTA 12:55814128-56416274
CIL_00045M CIL_00045M_0002 CGP 12:55836366-56345894

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process
GO:0040008 IEA regulation of growth

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000121545 brms1-001 protein_coding Danio_rerio 0.000001 60
ENST00000216807 BRMS1L-001 protein_coding Homo_sapiens 0 1530
ENST00000547420 BRMS1L-004 nonsense_mediated_decay Homo_sapiens 0 270
ENST00000548758 BRMS1L-003 retained_intron Homo_sapiens 0 977
ENST00000551774 BRMS1L-006 protein_coding Homo_sapiens 0 778
ENST00000552677 BRMS1L-002 nonsense_mediated_decay Homo_sapiens 0 1212
ENST00000552849 BRMS1L-005 retained_intron Homo_sapiens 0 243

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