C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TNF receptor-associated factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000060274 Traf3-201 ENSMUSG00000021277 10090 + 12:111166548-111267144 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMuscleOvaryENSMUST00000060274
Transcript ID Brain Liver Muscle Ovary
ENSMUST00000060274 2.766±0.00 0.417±0.00 0.430±0.10 0.825±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AG CIL_0009AG_0002 VISTA 12:110842738-111443613
CIL_00040T CIL_00040T_0002 CGP 12:111166370-111276426

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001817 IEA regulation of cytokine production
GO:0004842 IEA ubiquitin-protein transferase activity
GO:0005515 IPI protein binding
GO:0008063 IEA Toll signaling pathway
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0032088 IEA negative regulation of NF-kappaB transcription factor activity
GO:0033209 IEA tumor necrosis factor-mediated signaling pathway
GO:0042981 IEA regulation of apoptotic process
GO:0045087 IEA innate immune response
GO:0050688 IEA regulation of defense response to virus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000347662 TRAF3-201 protein_coding Homo_sapiens 0 3096
ENST00000351691 TRAF3-004 protein_coding Homo_sapiens 0 2324
ENST00000392745 TRAF3-005 protein_coding Homo_sapiens 0 1650
ENST00000539721 TRAF3-002 protein_coding Homo_sapiens 0 1312
ENST00000558700 TRAF3-007 nonsense_mediated_decay Homo_sapiens 0 427
ENST00000559734 TRAF3-008 protein_coding Homo_sapiens 0 846
ENST00000560371 TRAF3-001 protein_coding Homo_sapiens 0 2410

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