C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ssu-2 homolog (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000060847 Ssu2-001 ENSMUSG00000034387 10090 - 6:112359324-112388023 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000060847
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000060847 0.489±0.04 0.353±0.00 0.012±0.00 0.399±0.23 0.990±0.65 0.289±0.03 0.553±0.07 0.014±0.00 0.249±0.09 0.222±0.07 0.971±0.27 0.169±0.13 0.436±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000001 CIL_000001_0002 CGP 6:112273758-112388023
CIL_0005S5 CIL_0005S5_0002 CGP 6:112359324-112472871

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005737 ISS cytoplasm
GO:0008150 ND biological_process
GO:0031072 IEA heat shock protein binding
GO:0051082 IEA unfolded protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000317371 SSUH2-005 protein_coding Homo_sapiens 7e-28 130
ENST00000341795 SSUH2-001 protein_coding Homo_sapiens 5e-28 130
ENST00000413305 SSUH2-002 nonsense_mediated_decay Homo_sapiens 7e-37 159
ENST00000415132 SSUH2-008 nonsense_mediated_decay Homo_sapiens 5e-28 130
ENST00000420394 SSUH2-003 nonsense_mediated_decay Homo_sapiens 0 806
ENST00000427408 SSUH2-010 protein_coding Homo_sapiens 0 420
ENST00000435138 SSUH2-007 nonsense_mediated_decay Homo_sapiens 8e-28 130
ENST00000455157 SSUH2-004 nonsense_mediated_decay Homo_sapiens 0 544
ENST00000466215 SSUH2-011 processed_transcript Homo_sapiens 0 261
ENST00000483845 SSUH2-013 processed_transcript Homo_sapiens 1e-28 130
ENST00000484585 SSUH2-012 processed_transcript Homo_sapiens 2e-37 159
ENST00000495366 SSUH2-006 retained_intron Homo_sapiens 7e-28 130
ENST00000544814 SSUH2-201 protein_coding Homo_sapiens 0 835

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