C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: doublesex and mab-3 related transcription factor like family A2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000061187 Dmrta2-001 ENSMUSG00000047143 10090 + 4:109978053-109983687 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000061187
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000061187 0.123±0.03 0.296±0.08 0.130±0.03 4.533±4.50 0.075±0.03 0.235±0.06 0.022±0.01 0.089±0.03 0.028±0.02 0.177±0.04 0.021±0.01 0.344±0.27 0.575±0.42 1.244±0.56

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009AC CIL_0009AC_0002 VISTA 4:109462244-110063771
CIL_0008US CIL_0008US_0002 VISTA 4:109505979-110107022
CIL_0008UT CIL_0008UT_0002 VISTA 4:109558711-110160443
CIL_0008K0 CIL_0008K0_0002 VISTA 4:109582013-110183287

Gene Ontology

GO IDEvidence TypeGO Description
GO:0002052 IMP positive regulation of neuroblast proliferation
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005634 IDA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0021796 IMP cerebral cortex regionalization
GO:0035914 IMP skeletal muscle cell differentiation
GO:0042803 IDA protein homodimerization activity
GO:0043565 IDA sequence-specific DNA binding
GO:0046872 IEA metal ion binding
GO:0046982 IPI protein heterodimerization activity
GO:0048665 IMP neuron fate specification
GO:0071542 IMP dopaminergic neuron differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000259622 DMRT2-003 protein_coding Homo_sapiens 2e-33 148
ENST00000358146 DMRT2-001 protein_coding Homo_sapiens 2e-33 148
ENST00000382251 DMRT2-202 protein_coding Homo_sapiens 2e-33 148
ENST00000382255 DMRT2-004 protein_coding Homo_sapiens 2e-33 148
ENST00000404795 DMRTA2-002 protein_coding Homo_sapiens 0 1949
ENST00000412350 DMRT2-002 protein_coding Homo_sapiens 1e-33 148
ENST00000418121 DMRTA2-001 protein_coding Homo_sapiens 0 1807

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