C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted gene 9812
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000061934 Gm9812-201 ENSMUSG00000046747 10090 + 12:55820611-55821580 pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonLungOvaryTestisENSMUST00000061934
Transcript ID Adrenal Breast Colon Lung Ovary Testis
ENSMUST00000061934 4.092±1.02 2.529±0.71 3.818±0.42 3.051±0.00 6.370±1.17 7.057±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MF CIL_0008MF_0002 VISTA 12:55314270-55915258
CIL_0008ME CIL_0008ME_0002 VISTA 12:55343542-55944223
CIL_0007LS CIL_0007LS_0003 UCNEbase 12:55566857-57467023
CIL_00045O CIL_00045O_0002 CGP 12:55598917-55821167
CIL_00045N CIL_00045N_0002 CGP 12:55602929-55869735
CIL_0007WQ CIL_0007WQ_0002 VISTA 12:55814128-56416274

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000307138 RALGAPA1-001 protein_coding Homo_sapiens 9.99995e-41 174
ENST00000382366 RALGAPA1-003 protein_coding Homo_sapiens 8.00001e-41 174
ENST00000389698 RALGAPA1-002 protein_coding Homo_sapiens 9.99995e-41 174
ENST00000443361 RALGAPA1P-001 processed_pseudogene Homo_sapiens 1e-38 167
ENST00000553892 RALGAPA1-007 protein_coding Homo_sapiens 1e-38 167
ENST00000556192 RALGAPA1-021 processed_transcript Homo_sapiens 6.00036e-42 174

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