C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: malignant T cell amplified sequence 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000062148 Mcts2-001 ENSMUSG00000042814 10090 + 2:152687035-152687951 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000062148
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000062148 4.559±1.25 2.116±0.45 7.185±0.74 6.329±1.56 3.307±0.88 2.509±0.34 4.407±0.29 4.958±0.54 4.975±3.89 2.409±0.31 5.511±0.46 5.296±4.37 6.707±2.22 21.651±6.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096R CIL_00096R_0002 VISTA 2:152099091-152699726
CIL_0008K5 CIL_0008K5_0002 VISTA 2:152434876-153035572
CIL_00089Z CIL_00089Z_0002 VISTA 2:152488201-153091382
CIL_0008N4 CIL_0008N4_0002 VISTA 2:152517372-153118197
CIL_0001A0 CIL_0001A0_0002 CGP 2:152626951-152708670

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003723 IEA RNA binding
GO:0005575 ND cellular_component
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000371315 MCTS1-002 protein_coding Homo_sapiens 0 656
ENST00000371317 MCTS1-001 protein_coding Homo_sapiens 0 756
ENST00000394552 MCTS2P-001 processed_pseudogene Homo_sapiens 0 593
ENST00000479096 HM13-025 processed_transcript Homo_sapiens 0 237
ENST00000487133 MCTS1-004 processed_transcript Homo_sapiens 0 460
ENST00000493274 MCTS1-003 processed_transcript Homo_sapiens 0 486
ENST00000493879 MCTS1-005 processed_transcript Homo_sapiens 0 241

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