C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: otopetrin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000063136 Otop1-201 ENSMUSG00000051596 10090 + 5:38275972-38304209 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastHeartLiverLungMuscleOvaryPlacentaENSMUST00000063136
Transcript ID Bladder Breast Heart Liver Lung Muscle Ovary Placenta
ENSMUST00000063136 0.007±0.00 1.607±0.00 0.607±0.00 0.003±0.00 0.232±0.00 0.024±0.01 0.172±0.13 0.752±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008QQ CIL_0008QQ_0002 VISTA 5:37760247-38361421
CIL_00096M CIL_00096M_0002 VISTA 5:37765055-38366694
CIL_0008ZA CIL_0008ZA_0002 VISTA 5:37806142-38406996

Gene Ontology

GO IDEvidence TypeGO Description
GO:0009590 IMP detection of gravity
GO:0016020 IDA membrane
GO:0042472 IMP inner ear morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296358 OTOP1-001 protein_coding Homo_sapiens 0 250
ENST00000612102 AC116050.1-001 unprocessed_pseudogene Homo_sapiens 0 231
ENST00000615738 CH17-333M13.1-001 unprocessed_pseudogene Homo_sapiens 0 217
ENST00000616358 CH17-248H7.3-001 unprocessed_pseudogene Homo_sapiens 0 217
ENST00000619190 CH17-164J11.1-001 unprocessed_pseudogene Homo_sapiens 0 222

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