C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: serine/threonine kinase receptor associated protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000064910 Strap-001 ENSMUSG00000030224 10090 + 6:137735078-137751932 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000064910
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000064910 22.321±12.99 123.006±21.37 22.626±2.81 29.511±2.74 41.405±27.45 50.435±4.31 19.963±0.67 27.621±7.58 27.444±5.38 35.911±6.99 27.776±6.40 71.177±30.22 35.626±7.20 48.526±22.91

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007F9 CIL_0007F9_0002 CGP 6:137477245-137751932
CIL_000896 CIL_000896_0002 VISTA 6:137523549-138124777
CIL_0005FF CIL_0005FF_0002 CGP 6:137735078-137837891

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000387 ISS spliceosomal snRNP assembly
GO:0005102 IDA receptor binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0005829 ISS cytosol
GO:0005886 IEA plasma membrane
GO:0010633 IEA negative regulation of epithelial cell migration
GO:0010719 IEA negative regulation of epithelial to mesenchymal transition
GO:0030054 IEA cell junction
GO:0030277 IEA maintenance of gastrointestinal epithelium
GO:0030512 IDA negative regulation of transforming growth factor beta receptor signaling pathway
GO:0032797 ISS SMN complex
GO:0034719 ISS SMN-Sm protein complex
GO:0044822 IEA poly(A) RNA binding
GO:0050680 IEA negative regulation of epithelial cell proliferation
GO:0060394 IEA negative regulation of pathway-restricted SMAD protein phosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000025399 STRAP-002 protein_coding Homo_sapiens 0 1269
ENST00000295493 AC010132.11-001 processed_pseudogene Homo_sapiens 0 1020
ENST00000411875 PSMA2-002 nonsense_mediated_decay Homo_sapiens 0 1162
ENST00000419869 STRAP-001 protein_coding Homo_sapiens 0 1615
ENST00000456500 AC010878.3-001 processed_pseudogene Homo_sapiens 0 1170
ENST00000536737 STRAP-005 retained_intron Homo_sapiens 0 244
ENST00000538718 STRAP-006 protein_coding Homo_sapiens 1e-35 154
ENST00000539887 STRAP-007 retained_intron Homo_sapiens 0 309
ENST00000541731 STRAP-003 nonsense_mediated_decay Homo_sapiens 0 1184

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