C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CDC-like kinase 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065330 Clk3-201 ENSMUSG00000032316 10090 - 9:57750711-57765860 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000065330
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065330 17.670±3.23 16.782±2.00 17.503±1.06 17.587±5.24 18.786±3.80 20.324±6.01 10.046±4.53 11.002±3.87 25.725±21.14 15.410±6.07 8.016±2.68 23.672±6.68 18.070±7.07 17.476±4.54

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UD CIL_0007UD_0002 VISTA 9:57506610-58107834

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004674 IDA protein serine/threonine kinase activity
GO:0004712 IEA protein serine/threonine/tyrosine kinase activity
GO:0004713 IDA protein tyrosine kinase activity
GO:0005515 IEA protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0006468 IDA protein phosphorylation
GO:0016020 IEA membrane
GO:0016301 IEA kinase activity
GO:0018108 IDA peptidyl-tyrosine phosphorylation
GO:0031410 IEA cytoplasmic vesicle
GO:0043484 IEA regulation of RNA splicing
GO:0044822 IEA poly(A) RNA binding
GO:0045111 IEA intermediate filament cytoskeleton
GO:0046777 IDA protein autophosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000345005 CLK3-001 protein_coding Homo_sapiens 0 2372
ENST00000395066 CLK3-003 protein_coding Homo_sapiens 0 2721
ENST00000454830 CLK3-008 retained_intron Homo_sapiens 0 1923
ENST00000483723 CLK3-002 nonsense_mediated_decay Homo_sapiens 0 1748
ENST00000561673 CLK3-025 processed_transcript Homo_sapiens 0 357
ENST00000562078 CLK3-004 retained_intron Homo_sapiens 0 1637
ENST00000562626 CLK3-022 retained_intron Homo_sapiens 0 261
ENST00000562670 CLK3-014 protein_coding Homo_sapiens 3e-25 119
ENST00000563112 CLK3-018 retained_intron Homo_sapiens 0 200
ENST00000563297 CLK3-016 protein_coding Homo_sapiens 0 364
ENST00000563418 CLK3-024 protein_coding Homo_sapiens 0 263
ENST00000563842 CLK3-019 protein_coding Homo_sapiens 0 952
ENST00000564096 CLK3-015 protein_coding Homo_sapiens 0 983
ENST00000564468 CLK3-020 nonsense_mediated_decay Homo_sapiens 0 1022
ENST00000566126 CLK3-010 protein_coding Homo_sapiens 0 915
ENST00000566926 CLK3-023 protein_coding Homo_sapiens 0 599
ENST00000567805 CLK3-021 processed_transcript Homo_sapiens 0 257
ENST00000568139 CLK3-013 protein_coding Homo_sapiens 0 948
ENST00000568232 CLK3-005 retained_intron Homo_sapiens 0 501
ENST00000568488 CLK3-027 protein_coding Homo_sapiens 0 523
ENST00000568605 CLK3-007 retained_intron Homo_sapiens 0 667
ENST00000569063 CLK3-026 nonsense_mediated_decay Homo_sapiens 0 592
ENST00000569406 CLK3-006 retained_intron Homo_sapiens 0 1748
ENST00000616744 RP11-471J7.1-001 unprocessed_pseudogene Homo_sapiens 0 239

Loading