C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: growth factor independent 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065478 Gfi1-201 ENSMUSG00000029275 10090 - 5:107716666-107725805 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000065478
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000065478 0.025±0.00 0.016±0.01 0.010±0.00 0.175±0.00 0.036±0.01 0.047±0.04 0.018±0.00 0.041±0.02 0.141±0.00 0.138±0.07

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005ZO CIL_0005ZO_0002 CGP 5:107597373-107726036
CIL_0007C9 CIL_0007C9_0003 CGP 5:107716657-107875107

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0001078 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0003676 IEA nucleic acid binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0007638 IMP mechanosensory behavior
GO:0008270 IEA zinc ion binding
GO:0009996 IMP negative regulation of cell fate specification
GO:0010956 IEA negative regulation of calcidiol 1-monooxygenase activity
GO:0010977 IEA negative regulation of neuron projection development
GO:0016363 IEA nuclear matrix
GO:0016604 IEA nuclear body
GO:0017053 IEA transcriptional repressor complex
GO:0034121 IEA regulation of toll-like receptor signaling pathway
GO:0042472 IMP inner ear morphogenesis
GO:0042491 IMP auditory receptor cell differentiation
GO:0042660 IMP positive regulation of cell fate specification
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045165 IMP cell fate commitment
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0070105 IEA positive regulation of interleukin-6-mediated signaling pathway
GO:0071222 IEA cellular response to lipopolysaccharide

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294702 GFI1-002 protein_coding Homo_sapiens 0 1319
ENST00000370332 GFI1-001 protein_coding Homo_sapiens 0 1319
ENST00000427103 GFI1-201 protein_coding Homo_sapiens 0 1319

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