C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: thyroglobulin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065916 Tg-001 ENSMUSG00000053469 10090 + 15:66670753-66850721 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastHeartLiverLungMuscleOvaryPlacentaTestisENSMUST00000065916
Transcript ID Adipose Breast Heart Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000065916 0.013±0.01 0.014±0.00 0.068±0.02 0.011±0.00 0.085±0.02 0.010±0.00 0.024±0.01 0.012±0.00 0.210±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0009D4 CIL_0009D4_0002 VISTA 15:66524301-67127162
CIL_0004PY CIL_0004PY_0002 CGP 15:66577572-66850721
CIL_0004PV CIL_0004PV_0002 CGP 15:66670753-66850721

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005179 IEA hormone activity
GO:0005576 IEA extracellular region
GO:0005615 IDA extracellular space
GO:0006590 IBA thyroid hormone generation
GO:0015705 IMP iodide transport
GO:0030878 IEA thyroid gland development
GO:0031641 IMP regulation of myelination
GO:0042403 IMP thyroid hormone metabolic process
GO:0042446 IEA hormone biosynthetic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000220616 TG-001 protein_coding Homo_sapiens 0 5613
ENST00000519178 TG-003 protein_coding Homo_sapiens 0 2257
ENST00000519543 TG-005 protein_coding Homo_sapiens 0 1541
ENST00000520769 TG-019 retained_intron Homo_sapiens 0 383
ENST00000521107 TG-007 protein_coding Homo_sapiens 0 220
ENST00000522809 TG-008 retained_intron Homo_sapiens 0 411
ENST00000522996 TG-009 retained_intron Homo_sapiens 0 355
ENST00000523756 TG-002 nonsense_mediated_decay Homo_sapiens 0 3223
ENST00000523901 TG-020 nonsense_mediated_decay Homo_sapiens 0 449

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