C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: aprataxin and PNKP like factor
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000065997 Aplf-202 ENSMUSG00000030051 10090 - 6:87628429-87672168 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainColonLiverMuscleOvaryPlacentaTestisENSMUST00000065997
Transcript ID Bladder Brain Colon Liver Muscle Ovary Placenta Testis
ENSMUST00000065997 0.366±0.00 1.115±0.82 0.671±0.00 1.068±0.47 0.243±0.07 1.828±0.87 0.957±0.60 0.626±0.25

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000012 ISS single strand break repair
GO:0000166 ISS nucleotide binding
GO:0000737 IEA DNA catabolic process, endonucleolytic
GO:0003906 ISS DNA-(apurinic or apyrimidinic site) lyase activity
GO:0004520 ISS endodeoxyribonuclease activity
GO:0005634 ISS nucleus
GO:0005737 IEA cytoplasm
GO:0006302 ISS double-strand break repair
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0008408 ISS 3'-5' exonuclease activity
GO:0045191 IMP regulation of isotype switching
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000303795 APLF-001 protein_coding Homo_sapiens 0 532
ENST00000445692 APLF-004 nonsense_mediated_decay Homo_sapiens 0 326
ENST00000529851 APLF-006 nonsense_mediated_decay Homo_sapiens 0 459

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