C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NK2 homeobox 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000067020 Nkx2-4-001 ENSMUSG00000054160 10090 - 2:147083316-147085445 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastLiverLungOvaryPlacentaTestisENSMUST00000067020
Transcript ID Adipose Bladder Brain Breast Liver Lung Ovary Placenta Testis
ENSMUST00000067020 0.031±0.00 0.013±0.00 0.728±0.52 0.014±0.00 0.004±0.00 0.018±0.01 0.027±0.00 0.030±0.01 0.765±0.61

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00097L CIL_00097L_0002 VISTA 2:146657766-147260813
CIL_0008VN CIL_0008VN_0002 VISTA 2:146880290-147481581
CIL_0003QC CIL_0003QC_0002 CGP 2:147012996-147085445
CIL_0006WU CIL_0006WU_0002 CGP 2:147083316-147194243

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005575 ND cellular_component
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007275 IEA multicellular organismal development
GO:0043565 IEA sequence-specific DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000007829 nkx2.1a-001 protein_coding Danio_rerio 0 233
ENSDART00000005296 nkx2.9-001 protein_coding Danio_rerio 9e-16 90
ENSDART00000153363 protein_coding Danio_rerio 0.0001 53
ENST00000258829 NKX2-8-001 protein_coding Homo_sapiens 8e-40 169
ENST00000325017 NKX2-6-001 protein_coding Homo_sapiens 0 195
ENST00000329198 NKX2-5-001 protein_coding Homo_sapiens 0 198
ENST00000351817 NKX2-4-001 protein_coding Homo_sapiens 0 1624
ENST00000354822 NKX2-1-002 protein_coding Homo_sapiens 0 388
ENST00000357878 HMX3-001 protein_coding Homo_sapiens 0.0000001 62
ENST00000377142 NKX2-2-001 protein_coding Homo_sapiens 0 211
ENST00000424406 NKX2-5-003 protein_coding Homo_sapiens 0 198
ENST00000498187 NKX2-1-001 protein_coding Homo_sapiens 0 388
ENST00000518149 NKX2-1-004 protein_coding Homo_sapiens 0 388
ENST00000521848 NKX2-5-004 protein_coding Homo_sapiens 0 198
ENST00000522719 NKX2-1-003 protein_coding Homo_sapiens 0 388

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