C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: heterogeneous nuclear ribonucleoprotein A2/B1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000069949 Hnrnpa2b1-201 ENSMUSG00000004980 10090 - 6:51460932-51469894 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungOvaryPlacentaTestisENSMUST00000069949
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000069949 12.993±1.48 83.870±12.39 24.290±7.82 27.778±5.32 14.527±2.60 8.474±0.85 19.910±3.61 25.095±10.83 58.339±2.23 47.191±31.77

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007Y0 CIL_0007Y0_0002 VISTA 6:50872427-51473473
CIL_0007VE CIL_0007VE_0002 VISTA 6:50894712-51498223
CIL_0008Q3 CIL_0008Q3_0002 VISTA 6:51033774-51634476
CIL_000874 CIL_000874_0002 VISTA 6:51061843-51662696
CIL_0009DE CIL_0009DE_0002 VISTA 6:51408576-52009543
CIL_0002CP CIL_0002CP_0002 CGP 6:51432670-51469894
CIL_0002CO CIL_0002CO_0002 CGP 6:51460434-51483704

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IGI negative regulation of transcription from RNA polymerase II promoter
GO:0000166 IEA nucleotide binding
GO:0003723 ISS RNA binding
GO:0005634 IDA nucleus
GO:0005681 ISS spliceosomal complex
GO:0005737 IEA cytoplasm
GO:0006397 ISS mRNA processing
GO:0008380 IEA RNA splicing
GO:0030529 ISS ribonucleoprotein complex
GO:0043047 ISS single-stranded telomeric DNA binding
GO:0048025 IDA negative regulation of mRNA splicing, via spliceosome
GO:0050658 ISS RNA transport
GO:0097157 IDA pre-mRNA intronic binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000354667 HNRNPA2B1-001 protein_coding Homo_sapiens 0 1055
ENST00000356674 HNRNPA2B1-002 protein_coding Homo_sapiens 0 1225
ENST00000360787 HNRNPA2B1-006 nonsense_mediated_decay Homo_sapiens 0 1055
ENST00000411735 HNRNPA1P46-001 processed_pseudogene Homo_sapiens 2e-30 137
ENST00000463181 HNRNPA2B1-003 retained_intron Homo_sapiens 0 1055
ENST00000476233 HNRNPA2B1-007 processed_transcript Homo_sapiens 0 407
ENST00000490912 HNRNPA2B1-004 retained_intron Homo_sapiens 0 1055
ENST00000495810 HNRNPA2B1-008 retained_intron Homo_sapiens 0 510
ENST00000618183 HNRNPA2B1-201 protein_coding Homo_sapiens 0 804

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