C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chimerin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000070579 Chn1-003 ENSMUSG00000056486 10090 - 2:73612888-73625740 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverMuscleOvaryPlacentaTestisENSMUST00000070579
Transcript ID Brain Liver Muscle Ovary Placenta Testis
ENSMUST00000070579 491.036±0.00 0.351±0.12 0.671±0.07 4.218±1.77 5.457±0.01 38.353±9.06

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001HC CIL_0001HC_0002 CGP 2:73563215-73775346
CIL_0001HB CIL_0001HB_0002 CGP 2:73610660-73892639

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000295497 CHN1-002 protein_coding Homo_sapiens 0 1005
ENST00000409089 CHN1-012 protein_coding Homo_sapiens 0 656
ENST00000409156 CHN1-003 protein_coding Homo_sapiens 0 992
ENST00000409597 CHN1-014 protein_coding Homo_sapiens 0 1005
ENST00000409900 CHN1-001 protein_coding Homo_sapiens 0 1005
ENST00000413882 CHN1-013 protein_coding Homo_sapiens 0 544
ENST00000425395 CHN1-008 nonsense_mediated_decay Homo_sapiens 0 320
ENST00000443238 CHN1-010 protein_coding Homo_sapiens 0 525
ENST00000444394 CHN1-011 protein_coding Homo_sapiens 0 641
ENST00000485882 CHN1-016 retained_intron Homo_sapiens 0 237
ENST00000488080 CHN1-004 processed_transcript Homo_sapiens 0 1005
ENST00000491801 CHN1-017 retained_intron Homo_sapiens 0 189
ENST00000492964 CHN1-009 retained_intron Homo_sapiens 0 462

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