C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: programmed cell death 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072141 Pdcd11-201 ENSMUSG00000025047 10090 + 19:47090766-47131143 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000072141
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000072141 4.998±3.16 4.015±0.95 5.394±0.53 5.201±0.86 3.207±1.29 3.006±0.91 2.269±0.53 3.405±1.34 4.660±2.25 5.224±0.39 2.088±0.42 7.055±2.54 9.035±3.62 3.471±0.72

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00039E CIL_00039E_0003 CGP 19:47083471-47131143
CIL_000661 CIL_000661_0002 CGP 19:47090766-47138294

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005829 IDA cytosol
GO:0006355 TAS regulation of transcription, DNA-templated
GO:0006364 IEA rRNA processing
GO:0006397 IEA mRNA processing
GO:0006915 TAS apoptotic process
GO:0008134 IEA transcription factor binding
GO:0043123 TAS positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0044822 IEA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000369797 PDCD11-001 protein_coding Homo_sapiens 0 2861
ENST00000478543 PDCD11-004 retained_intron Homo_sapiens 0 420

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