C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 5513
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000072982 Gm5513-201 ENSMUSG00000063586 10090 - 19:14959549-14960766 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyLiverMuscleOvaryPlacentaENSMUST00000072982
Transcript ID Adipose Bladder Brain Breast Kidney Liver Muscle Ovary Placenta
ENSMUST00000072982 0.039±0.00 0.011±0.01 0.007±0.00 0.136±0.00 0.033±0.00 0.035±0.03 0.032±0.00 0.068±0.02 0.057±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007KE CIL_0007KE_0003 UCNEbase 19:14123720-15837295
CIL_0009CX CIL_0009CX_0002 VISTA 19:14358815-14960520
CIL_0008O8 CIL_0008O8_0002 VISTA 19:14476716-15077986
CIL_000846 CIL_000846_0002 VISTA 19:14590554-15192150
CIL_0008AG CIL_0008AG_0002 VISTA 19:14639835-15241282

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000293831 EIF4A1-001 protein_coding Homo_sapiens 0 1626
ENST00000394444 EIF4A1P8-001 processed_pseudogene Homo_sapiens 0 1151
ENST00000396527 EIF4A1-003 retained_intron Homo_sapiens 0 547
ENST00000415667 EIF4A1P13-001 processed_pseudogene Homo_sapiens 0 211
ENST00000421800 EIF4A1P7-001 processed_pseudogene Homo_sapiens 0 1321
ENST00000422633 EIF4A1P2-001 processed_pseudogene Homo_sapiens 0 1498
ENST00000428062 EIF4A1P5-001 processed_pseudogene Homo_sapiens 0 1199
ENST00000428832 EIF4A1P10-001 processed_pseudogene Homo_sapiens 0 1519
ENST00000448133 EIF4A1P6-001 processed_pseudogene Homo_sapiens 0 1206
ENST00000550578 RP11-1136G11.6-001 processed_pseudogene Homo_sapiens 0 1413
ENST00000551910 EIF4A1P12-001 processed_pseudogene Homo_sapiens 6.00036e-42 172
ENST00000576035 EIF4A1P9-001 processed_pseudogene Homo_sapiens 0 1330
ENST00000577269 EIF4A1-007 protein_coding Homo_sapiens 0 1332
ENST00000577731 EIF4A1-034 retained_intron Homo_sapiens 0 676
ENST00000577738 EIF4A1-016 retained_intron Homo_sapiens 0 420
ENST00000577929 EIF4A1-018 protein_coding Homo_sapiens 0 368
ENST00000578324 EIF4A1-009 retained_intron Homo_sapiens 0 1303
ENST00000578476 EIF4A1-014 nonsense_mediated_decay Homo_sapiens 0 494
ENST00000578495 EIF4A1-026 protein_coding Homo_sapiens 0 1181
ENST00000578569 EIF4A1-029 retained_intron Homo_sapiens 0 505
ENST00000578754 EIF4A1-023 protein_coding Homo_sapiens 0 518
ENST00000579085 EIF4A1-019 retained_intron Homo_sapiens 3e-35 152
ENST00000579139 EIF4A1-013 nonsense_mediated_decay Homo_sapiens 0 407
ENST00000580461 EIF4A1-002 nonsense_mediated_decay Homo_sapiens 0 420
ENST00000580886 EIF4A1-012 retained_intron Homo_sapiens 9e-36 154
ENST00000580888 EIF4A1-038 nonsense_mediated_decay Homo_sapiens 0 763
ENST00000581384 EIF4A1-037 protein_coding Homo_sapiens 0 782
ENST00000581544 EIF4A1-004 nonsense_mediated_decay Homo_sapiens 0 767
ENST00000581770 EIF4A1-015 protein_coding Homo_sapiens 0 296
ENST00000581808 EIF4A1-033 processed_transcript Homo_sapiens 7e-33 143
ENST00000581841 EIF4A1-035 retained_intron Homo_sapiens 0 305
ENST00000582050 EIF4A1-032 nonsense_mediated_decay Homo_sapiens 0 298
ENST00000582169 EIF4A1-024 protein_coding Homo_sapiens 0 562
ENST00000582213 EIF4A1-021 retained_intron Homo_sapiens 0 346
ENST00000582746 EIF4A1-008 protein_coding Homo_sapiens 0 1330
ENST00000582848 EIF4A1-027 retained_intron Homo_sapiens 0 634
ENST00000583217 EIF4A1-030 retained_intron Homo_sapiens 0 387
ENST00000583389 EIF4A1-031 protein_coding Homo_sapiens 0 874
ENST00000583802 EIF4A1-022 protein_coding Homo_sapiens 0 691
ENST00000583899 EIF4A1-020 retained_intron Homo_sapiens 1e-34 150
ENST00000584054 EIF4A1-011 retained_intron Homo_sapiens 0 255
ENST00000584712 EIF4A1-036 retained_intron Homo_sapiens 0 449
ENST00000584784 EIF4A1-028 protein_coding Homo_sapiens 0 833
ENST00000584798 EIF4A1-010 retained_intron Homo_sapiens 0 200
ENST00000584860 EIF4A1-017 protein_coding Homo_sapiens 0 1074
ENST00000584901 EIF4A1-006 retained_intron Homo_sapiens 0 667
ENST00000585024 EIF4A1-025 protein_coding Homo_sapiens 0 725
ENST00000614237 SENP3-EIF4A1-001 nonsense_mediated_decay Homo_sapiens 0 1626

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