C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: exosome component 10
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000076022 Exosc10-005 ENSMUSG00000017264 10090 + 4:148558462-148582401 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000076022
Transcript ID Brain Breast Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000076022 12.192±0.00 1.710±0.22 1.220±0.00 1.721±0.00 0.963±0.36 1.639±0.00 13.223±0.00 25.904±9.73 14.859±12.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008JY CIL_0008JY_0002 VISTA 4:148408124-149009196
CIL_0008JG CIL_0008JG_0002 VISTA 4:148444314-149044861
CIL_0008RU CIL_0008RU_0002 VISTA 4:148508781-149109416
CIL_0008S2 CIL_0008S2_0002 VISTA 4:148555953-149160332

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000176 IEA nuclear exosome (RNase complex)
GO:0003676 IEA nucleic acid binding
GO:0005730 TAS nucleolus
GO:0006396 IEA RNA processing
GO:0008408 IEA 3'-5' exonuclease activity
GO:0009048 IMP dosage compensation by inactivation of X chromosome
GO:0090305 IEA nucleic acid phosphodiester bond hydrolysis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000304457 EXOSC10-002 protein_coding Homo_sapiens 0 2420
ENST00000376936 EXOSC10-001 protein_coding Homo_sapiens 0 2025
ENST00000474216 EXOSC10-003 retained_intron Homo_sapiens 0 337
ENST00000485606 EXOSC10-011 processed_transcript Homo_sapiens 0 337
ENST00000490565 EXOSC10-005 retained_intron Homo_sapiens 4e-33 145

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