C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: G elongation factor, mitochondrial 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000077271 Gfm1-001 ENSMUSG00000027774 10090 + 3:67430096-67476529 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077271
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077271 3.492±0.31 3.149±0.41 4.807±1.32 3.258±0.94 11.995±0.46 6.120±0.78 4.201±1.03 3.183±0.22 14.582±1.16 3.549±1.42 5.220±1.81 1.373±0.23

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008BN CIL_0008BN_0002 VISTA 3:66846973-67447795
CIL_00086V CIL_00086V_0002 VISTA 3:66870618-67471970
CIL_0008BM CIL_0008BM_0002 VISTA 3:66890932-67492590
CIL_0008KO CIL_0008KO_0002 VISTA 3:66912683-67513884
CIL_000808 CIL_000808_0002 VISTA 3:67009670-67610443
CIL_000815 CIL_000815_0002 VISTA 3:67040647-67641402
CIL_000937 CIL_000937_0002 VISTA 3:67250193-67852228
CIL_0004JV CIL_0004JV_0003 CGP 3:67374097-67476529
CIL_0004JU CIL_0004JU_0003 CGP 3:67430096-67476529

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003746 ISS translation elongation factor activity
GO:0003924 ISS GTPase activity
GO:0005515 IEA protein binding
GO:0005525 IEA GTP binding
GO:0005739 IDA mitochondrion
GO:0006184 IEA GTP catabolic process
GO:0044822 IEA poly(A) RNA binding
GO:0070125 ISS mitochondrial translational elongation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264263 GFM1-004 protein_coding Homo_sapiens 0 1700
ENST00000312756 GFM1-006 retained_intron Homo_sapiens 0 309
ENST00000477721 GFM1-011 retained_intron Homo_sapiens 0 532
ENST00000478254 GFM1-003 nonsense_mediated_decay Homo_sapiens 0 2331
ENST00000478576 GFM1-002 protein_coding Homo_sapiens 0 1779
ENST00000481468 GFM1-009 retained_intron Homo_sapiens 0 268
ENST00000486715 GFM1-001 protein_coding Homo_sapiens 0 2362
ENST00000490261 GFM1-008 processed_transcript Homo_sapiens 0 309

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