C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L38
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000077915 Rpl38-002 ENSMUSG00000057322 10090 + 11:114668548-114672331 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077915
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077915 63.728±21.53 11.736±3.85 117.968±1.52 221.519±163.26 48.154±8.25 53.302±12.02 53.318±9.39 94.200±25.65 73.771±73.38 74.181±4.72 47.411±4.84 47.095±23.69 99.364±34.94 70.862±24.80

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00073F CIL_00073F_0002 CGP 11:113776374-114672331
CIL_0003AD CIL_0003AD_0003 CGP 11:114668524-114720977

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 IMP skeletal system development
GO:0001503 IMP ossification
GO:0003674 ND molecular_function
GO:0003735 IEA structural constituent of ribosome
GO:0006412 IEA translation
GO:0006417 IMP regulation of translation
GO:0007605 IMP sensory perception of sound
GO:0033291 IDA eukaryotic 80S initiation complex
GO:0034463 IDA 90S preribosome assembly
GO:0042474 IMP middle ear morphogenesis
GO:0048318 IMP axial mesoderm development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000145377 rpl38-002 protein_coding Danio_rerio 0 231
ENSDART00000021069 rpl38-001 protein_coding Danio_rerio 0 231

Loading