C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 114
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078050 Rnf114-001 ENSMUSG00000006418 10090 + 2:167503089-167516173 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078050
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078050 13.335±1.99 11.709±1.83 12.670±2.13 29.600±4.42 18.045±3.64 20.672±2.86 14.435±0.61 17.705±2.89 16.576±3.07 20.040±1.11 5.243±0.96 17.120±6.97 10.583±6.26 9.162±3.51

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008I4 CIL_0008I4_0002 VISTA 2:167024358-167627099
CIL_00087E CIL_00087E_0002 VISTA 2:167269881-167871243
CIL_0001VJ CIL_0001VJ_0002 CGP 2:167421712-167492887
CIL_00027D CIL_00027D_0002 CGP 2:167481133-167516173
CIL_0006FM CIL_0006FM_0002 CGP 2:167492645-167542814

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0007275 IEA multicellular organismal development
GO:0007283 IEA spermatogenesis
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0030154 IEA cell differentiation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000244061 RNF114-001 protein_coding Homo_sapiens 0 861
ENST00000622920 RNF114-004 protein_coding Homo_sapiens 0 619
ENST00000622999 RNF114-002 nonsense_mediated_decay Homo_sapiens 0 719
ENST00000623528 RNF114-006 nonsense_mediated_decay Homo_sapiens 0 473
ENST00000623732 RNF114-008 nonsense_mediated_decay Homo_sapiens 0 433
ENST00000624620 RNF114-007 retained_intron Homo_sapiens 0 366
ENST00000624666 RNF114-005 retained_intron Homo_sapiens 0 475
ENST00000625177 RNF114-009 protein_coding Homo_sapiens 0 617

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