C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cancer susceptibility candidate 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000078752 Casc4-001 ENSMUSG00000060227 10090 + 2:121866970-121936220 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000078752
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000078752 3.099±0.17 3.053±0.78 5.337±1.39 0.923±0.68 1.367±0.50 0.872±0.22 2.822±1.16 1.603±0.91 7.265±1.12 1.318±0.11 4.224±1.74 1.913±0.83 5.660±1.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000687 CIL_000687_0002 CGP 2:121545529-121936220

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005794 IEA Golgi apparatus
GO:0008150 ND biological_process
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299957 CASC4-001 protein_coding Homo_sapiens 0 2063
ENST00000345795 CASC4-002 protein_coding Homo_sapiens 0 1339
ENST00000429162 CASC4-004 processed_transcript Homo_sapiens 0 488
ENST00000456608 CASC4P1-001 processed_pseudogene Homo_sapiens 0 1511
ENST00000557945 CASC4-005 nonsense_mediated_decay Homo_sapiens 0 686
ENST00000558735 CASC4-007 nonsense_mediated_decay Homo_sapiens 0 383
ENST00000558847 CASC4-009 protein_coding Homo_sapiens 0 196
ENST00000559222 CASC4-006 protein_coding Homo_sapiens 0 728

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