C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: solute carrier family 24 (sodium/potassium/calcium exchanger), member 4
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079020 Slc24a4-001 ENSMUSG00000041771 10090 + 12:102129174-102266749 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000079020
Transcript ID Adipose Adrenal Bladder Brain Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000079020 0.116±0.11 0.056±0.00 0.024±0.00 0.129±0.00 0.087±0.00 0.233±0.14 0.056±0.01 0.063±0.02 5.366±2.34 0.526±0.13 0.060±0.01 0.016±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002N4 CIL_0002N4_0003 CGP 12:101975974-102267091
CIL_000539 CIL_000539_0002 CGP 12:102128733-102390855

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005432 ISA calcium:sodium antiporter activity
GO:0005737 IDA cytoplasm
GO:0005886 IEA plasma membrane
GO:0005887 IC integral component of plasma membrane
GO:0006813 IEA potassium ion transport
GO:0006874 IEA cellular calcium ion homeostasis
GO:0007608 IMP sensory perception of smell
GO:0008273 ISA calcium, potassium:sodium antiporter activity
GO:0015293 IEA symporter activity
GO:0016020 IDA membrane
GO:0035725 ISA sodium ion transmembrane transport
GO:0050896 IEA response to stimulus
GO:0070588 IEA calcium ion transmembrane transport
GO:0097186 IMP amelogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000157286 si:ch73-335m24.5-201 protein_coding Danio_rerio 4e-35 154
ENSDART00000112438 si:ch73-335m24.5-001 protein_coding Danio_rerio 4e-35 154
ENST00000393265 SLC24A4-003 protein_coding Homo_sapiens 0 2198
ENST00000525557 SLC24A4-007 protein_coding Homo_sapiens 0 1042
ENST00000526482 SLC24A4-005 retained_intron Homo_sapiens 0 1295
ENST00000531433 SLC24A4-002 protein_coding Homo_sapiens 0 1295
ENST00000532405 SLC24A4-001 protein_coding Homo_sapiens 0 2394
ENST00000554925 SLC24A4-008 retained_intron Homo_sapiens 0 1666

Loading