C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein S6, pseudogene 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079841 Rps6-ps2-201 ENSMUSG00000056772 10090 + 8:88806391-88807140 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainLiverOvaryPlacentaTestisENSMUST00000079841
Transcript ID Adipose Adrenal Bladder Brain Liver Ovary Placenta Testis
ENSMUST00000079841 0.060±0.00 0.143±0.00 0.116±0.03 0.100±0.12 0.021±0.01 0.253±0.06 0.382±0.46 0.078±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0003 UCNEbase 8:88447800-92743752
CIL_00090I CIL_00090I_0002 VISTA 8:88457981-89059109
CIL_00085B CIL_00085B_0002 VISTA 8:88474689-89076074
CIL_00090J CIL_00090J_0002 VISTA 8:88479183-89079972
CIL_00090K CIL_00090K_0002 VISTA 8:88577161-89178261
CIL_00090L CIL_00090L_0002 VISTA 8:88581293-89181923
CIL_00090M CIL_00090M_0002 VISTA 8:88602694-89203557
CIL_00090N CIL_00090N_0002 VISTA 8:88624827-89225618
CIL_0008AU CIL_0008AU_0002 VISTA 8:88639020-89240224
CIL_0008AT CIL_0008AT_0002 VISTA 8:88673175-89274114
CIL_0008AL CIL_0008AL_0002 VISTA 8:88691555-89292644
CIL_00077S CIL_00077S_0002 CGP 8:88697028-89044162
CIL_0007ZD CIL_0007ZD_0002 VISTA 8:88702204-89304697
CIL_0007WV CIL_0007WV_0002 VISTA 8:88705819-89307424
CIL_0008AK CIL_0008AK_0002 VISTA 8:88786387-89387574

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315377 RPS6-003 protein_coding Homo_sapiens 0 782
ENST00000366455 AC007618.3-001 processed_pseudogene Homo_sapiens 0 361
ENST00000380381 RPS6-004 protein_coding Homo_sapiens 7e-39 165
ENST00000380384 RPS6-002 protein_coding Homo_sapiens 0 782
ENST00000380394 RPS6-001 protein_coding Homo_sapiens 0 789
ENST00000393214 AC004386.4-001 processed_pseudogene Homo_sapiens 0 477
ENST00000397390 RP11-146N23.1-001 processed_pseudogene Homo_sapiens 0 383
ENST00000463969 RP11-864G5.1-001 processed_pseudogene Homo_sapiens 0 547
ENST00000464444 AD000092.3-001 processed_pseudogene Homo_sapiens 0 638
ENST00000475592 RP11-392P7.1-001 processed_pseudogene Homo_sapiens 0 625
ENST00000479691 RPS6P16-001 processed_pseudogene Homo_sapiens 0 449
ENST00000481577 RP11-771F20.1-001 processed_pseudogene Homo_sapiens 0 599
ENST00000497406 RPS6P22-001 processed_pseudogene Homo_sapiens 0 446
ENST00000498815 RPS6-005 processed_transcript Homo_sapiens 0 287
ENST00000572611 RPS6P22-001 processed_pseudogene Homo_sapiens 0 446

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