C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ring finger protein 169
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000080817 Rnf169-001 ENSMUSG00000058761 10090 - 7:99920257-99980458 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000080817
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000080817 3.224±1.39 4.227±0.61 1.175±0.23 2.700±0.37 3.108±0.75 2.943±0.28 1.047±0.28 2.811±0.45 2.974±1.32 4.147±0.30 0.720±0.25 4.344±0.47 1.311±0.71 0.829±0.20

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008I3 CIL_0008I3_0002 VISTA 7:99464975-100069320

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 ISS nucleus
GO:0005654 ISS nucleoplasm
GO:0005886 IEA plasma membrane
GO:0006974 ISS cellular response to DNA damage stimulus
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0031491 ISS nucleosome binding
GO:0035861 ISS site of double-strand break
GO:0043231 IEA intracellular membrane-bounded organelle
GO:0070530 ISS K63-linked polyubiquitin binding
GO:2000780 ISS negative regulation of double-strand break repair

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000299563 RNF169-001 protein_coding Homo_sapiens 0 1827

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