C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphogluconate dehydrogenase
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000084124 Pgd-001 ENSMUSG00000028961 10090 - 4:149149991-149166707 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000084124
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000084124 183.810±3.85 163.107±12.89 48.611±0.02 26.367±7.58 173.417±63.31 106.087±25.65 17.221±4.61 61.095±1.76 35.309±9.58 84.835±10.04 5.636±0.78 92.518±14.30 75.586±21.36 10.130±2.40

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008S2 CIL_0008S2_0002 VISTA 4:148555953-149160332
CIL_00082Y CIL_00082Y_0002 VISTA 4:148576108-149176659
CIL_00085P CIL_00085P_0002 VISTA 4:148597228-149198219
CIL_0007WE CIL_0007WE_0002 VISTA 4:148621504-149222572
CIL_0008IM CIL_0008IM_0002 VISTA 4:148744049-149345133
CIL_0003MR CIL_0003MR_0002 CGP 4:149149991-149307693

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004616 ISS phosphogluconate dehydrogenase (decarboxylating) activity
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006098 ISS pentose-phosphate shunt
GO:0009051 IEA pentose-phosphate shunt, oxidative branch
GO:0019322 IDA pentose biosynthetic process
GO:0019521 IEA D-gluconate metabolic process
GO:0050661 IEA NADP binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000270776 PGD-001 protein_coding Homo_sapiens 0 1714
ENST00000460189 PGD-008 protein_coding Homo_sapiens 0 612
ENST00000483936 PGD-007 protein_coding Homo_sapiens 0 665
ENST00000491493 PGD-002 protein_coding Homo_sapiens 0 778
ENST00000493288 PGD-010 retained_intron Homo_sapiens 0 281
ENST00000498356 PGD-009 processed_transcript Homo_sapiens 0 699
ENST00000548349 RP11-25J3.2-001 processed_pseudogene Homo_sapiens 0 542
ENST00000581802 PGDP1-001 processed_pseudogene Homo_sapiens 0 1434

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