C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein phosphatase 2, regulatory subunit B', gamma
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000084985 Ppp2r5c-201 ENSMUSG00000017843 10090 + 12:110485739-110583061 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000084985
Transcript ID Adipose Adrenal Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000084985 6.348±0.21 3.281±0.83 8.195±1.42 4.675±1.09 2.767±1.12 6.404±0.40 3.490±0.92 1.631±0.69 7.742±1.46 5.391±1.45 4.986±2.05 2.586±0.75 22.522±0.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004A7 CIL_0004A7_0002 CGP 12:110279068-110583061
CIL_0004A6 CIL_0004A6_0002 CGP 12:110485739-110666945

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000159 ISS protein phosphatase type 2A complex
GO:0000775 ISS chromosome, centromeric region
GO:0005515 IPI protein binding
GO:0005634 TAS nucleus
GO:0006977 IEA DNA damage response, signal transduction by p53 class mediator resulting in cell cycle arrest
GO:0008285 IEA negative regulation of cell proliferation
GO:0008601 IEA protein phosphatase type 2A regulator activity
GO:0042771 IEA intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0043161 ISO proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0050790 IEA regulation of catalytic activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000328724 PPP2R5C-002 protein_coding Homo_sapiens 0 1681
ENST00000334743 PPP2R5C-001 protein_coding Homo_sapiens 0 2322
ENST00000350249 PPP2R5C-005 protein_coding Homo_sapiens 0 1988
ENST00000422945 PPP2R5C-201 protein_coding Homo_sapiens 0 2132
ENST00000441193 AC009263.2-001 processed_pseudogene Homo_sapiens 0 1086
ENST00000445439 PPP2R5C-006 protein_coding Homo_sapiens 0 1873
ENST00000495716 RP11-168J18.6-001 processed_pseudogene Homo_sapiens 0 1493
ENST00000553730 PPP2R5C-008 retained_intron Homo_sapiens 0 614
ENST00000554137 PPP2R5C-027 nonsense_mediated_decay Homo_sapiens 0 311
ENST00000554147 PPP2R5C-025 retained_intron Homo_sapiens 0 448
ENST00000555237 PPP2R5C-024 protein_coding Homo_sapiens 0 449
ENST00000556218 PPP2R5C-012 processed_transcript Homo_sapiens 0 955
ENST00000556307 PPP2R5C-019 nonsense_mediated_decay Homo_sapiens 0 294
ENST00000556570 PPP2R5C-029 processed_transcript Homo_sapiens 0 483
ENST00000556805 PPP2R5C-011 retained_intron Homo_sapiens 1e-34 150
ENST00000556946 PPP2R5C-017 protein_coding Homo_sapiens 0 298
ENST00000557071 PPP2R5C-023 nonsense_mediated_decay Homo_sapiens 0 316
ENST00000557095 PPP2R5C-009 protein_coding Homo_sapiens 0 1600
ENST00000557268 PPP2R5C-003 protein_coding Homo_sapiens 0 2132
ENST00000557534 PPP2R5C-010 nonsense_mediated_decay Homo_sapiens 0 259
ENST00000557621 PPP2R5C-026 protein_coding Homo_sapiens 0 675
ENST00000557714 PPP2R5C-030 protein_coding Homo_sapiens 0 248
ENST00000557716 PPP2R5C-013 protein_coding Homo_sapiens 0 577
ENST00000561006 PPP2R5C-031 protein_coding Homo_sapiens 0 468

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