C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Ral GTPase activating protein, alpha subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000085385 Ralgapa1-201 ENSMUSG00000021027 10090 - 12:55602929-55821167 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000085385
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000085385 4.656±0.63 3.184±0.33 3.707±0.49 4.730±0.00 3.381±0.70 1.568±0.69 1.769±0.31 2.040±0.70 1.301±1.08 1.541±0.38 1.373±0.75 4.814±1.94 2.159±0.91 4.211±0.96

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008MF CIL_0008MF_0002 VISTA 12:55314270-55915258
CIL_0008ME CIL_0008ME_0002 VISTA 12:55343542-55944223
CIL_0007LS CIL_0007LS_0003 UCNEbase 12:55566857-57467023
CIL_00045O CIL_00045O_0002 CGP 12:55598917-55821167
CIL_00045N CIL_00045N_0002 CGP 12:55602929-55869735

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0017123 ISS Ral GTPase activator activity
GO:0032859 ISS activation of Ral GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000202677 RALGAPA2-008 protein_coding Homo_sapiens 1e-33 150
ENST00000307138 RALGAPA1-001 protein_coding Homo_sapiens 0 8296
ENST00000382366 RALGAPA1-003 protein_coding Homo_sapiens 0 4961
ENST00000389698 RALGAPA1-002 protein_coding Homo_sapiens 0 8750
ENST00000443361 RALGAPA1P-001 processed_pseudogene Homo_sapiens 0 7989
ENST00000553892 RALGAPA1-007 protein_coding Homo_sapiens 0 5193
ENST00000553917 RALGAPA1-012 retained_intron Homo_sapiens 0 640
ENST00000554259 RALGAPA1-019 protein_coding Homo_sapiens 0 2987
ENST00000554355 RALGAPA1-015 retained_intron Homo_sapiens 0 505
ENST00000554573 RALGAPA1-006 protein_coding Homo_sapiens 0 1328
ENST00000554652 RALGAPA1-005 retained_intron Homo_sapiens 0 2342
ENST00000554704 RALGAPA1-018 processed_transcript Homo_sapiens 0 2300
ENST00000556106 RALGAPA1-017 processed_transcript Homo_sapiens 0 403
ENST00000556192 RALGAPA1-021 processed_transcript Homo_sapiens 2.8026e-45 185
ENST00000556837 RALGAPA1-016 processed_transcript Homo_sapiens 0 357
ENST00000556839 RALGAPA1-011 retained_intron Homo_sapiens 0 985
ENST00000557069 RALGAPA1-010 retained_intron Homo_sapiens 0 501
ENST00000557104 RALGAPA1-009 retained_intron Homo_sapiens 0 368

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