C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000085546 Hmgb1-001 ENSMUSG00000066551 10090 - 5:149046702-149053040 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000085546
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000085546 14.521±5.24 4.362±1.41 22.657±10.21 28.403±19.52 13.205±2.80 11.696±2.24 11.779±2.25 22.391±5.26 36.485±24.90 26.854±3.08 11.162±4.84 15.846±6.56 22.414±15.82 5.063±0.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007UA CIL_0007UA_0002 VISTA 5:149020224-149622595
CIL_0004CF CIL_0004CF_0002 CGP 5:149046702-149215434

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000793 IEA condensed chromosome
GO:0001786 TAS phosphatidylserine binding
GO:0002437 IEA inflammatory response to antigenic stimulus
GO:0003677 IEA DNA binding
GO:0003700 IEA sequence-specific DNA binding transcription factor activity
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005615 IEA extracellular space
GO:0005634 IEA nucleus
GO:0005737 IEA cytoplasm
GO:0006288 IEA base-excision repair, DNA ligation
GO:0006357 IEA regulation of transcription from RNA polymerase II promoter
GO:0006954 TAS inflammatory response
GO:0008134 IEA transcription factor binding
GO:0008201 IEA heparin binding
GO:0009986 IEA cell surface
GO:0017053 IEA transcriptional repressor complex
GO:0017055 IEA negative regulation of RNA polymerase II transcriptional preinitiation complex assembly
GO:0033151 IEA V(D)J recombination
GO:0043065 IEA positive regulation of apoptotic process
GO:0043280 IEA positive regulation of cysteine-type endopeptidase activity involved in apoptotic process
GO:0043388 IEA positive regulation of DNA binding
GO:0044822 IEA poly(A) RNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0070491 IEA repressing transcription factor binding
GO:2000426 IDA negative regulation of apoptotic cell clearance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000255320 HMGB1P5-001 transcribed_processed_pseudogene Homo_sapiens 0 865
ENST00000264052 SP100-001 protein_coding Homo_sapiens 0 902
ENST00000326004 HMGB1-003 protein_coding Homo_sapiens 0 907
ENST00000339872 HMGB1-001 protein_coding Homo_sapiens 0 1467
ENST00000341423 HMGB1-004 protein_coding Homo_sapiens 0 1700
ENST00000395823 HMGB1P10-001 processed_pseudogene Homo_sapiens 0 725
ENST00000399489 HMGB1-009 protein_coding Homo_sapiens 0 795
ENST00000399494 HMGB1-011 protein_coding Homo_sapiens 0 1469
ENST00000402555 HMGB1P20-001 processed_pseudogene Homo_sapiens 0 625
ENST00000405805 HMGB1-012 protein_coding Homo_sapiens 0 1467
ENST00000406019 HMGB1P13-001 processed_pseudogene Homo_sapiens 0 588
ENST00000413899 HMGB1P11-001 processed_pseudogene Homo_sapiens 0 704
ENST00000437242 HMGB1P31-001 processed_pseudogene Homo_sapiens 0 429
ENST00000438594 HMGB1P12-001 processed_pseudogene Homo_sapiens 0 475
ENST00000439613 HMGB1P37-001 processed_pseudogene Homo_sapiens 0 689
ENST00000447155 HMGB1P16-001 processed_pseudogene Homo_sapiens 0 534
ENST00000451497 HMGB1P5-002 processed_transcript Homo_sapiens 0 1201
ENST00000452520 HMGB1P26-001 processed_pseudogene Homo_sapiens 0 595
ENST00000455362 HMGB1P4-001 processed_pseudogene Homo_sapiens 0 647
ENST00000459868 FMO1-004 processed_transcript Homo_sapiens 0 244
ENST00000468384 HMGB1-007 processed_transcript Homo_sapiens 0 440
ENST00000469112 FMO1-002 processed_transcript Homo_sapiens 5e-35 154
ENST00000487709 HMGB1P36-001 processed_pseudogene Homo_sapiens 0 394
ENST00000490788 HMGB1-008 processed_transcript Homo_sapiens 0 307
ENST00000522557 HMGB1P1-001 processed_pseudogene Homo_sapiens 0 785
ENST00000558211 HMGB1P8-001 processed_pseudogene Homo_sapiens 0 255
ENST00000559968 RP11-643G16.4-002 processed_transcript Homo_sapiens 0 891
ENST00000569046 RP11-673C5.1-001 processed_pseudogene Homo_sapiens 0 856
ENST00000611897 RP11-19G24.3-002 processed_transcript Homo_sapiens 0 289
ENST00000615653 RP11-19G24.3-001 transcribed_processed_pseudogene Homo_sapiens 0 723

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