C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tubulin, alpha 3B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087445 Tuba3b-001 ENSMUSG00000067338 10090 + 6:145615757-145621479 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENSMUST00000087445
Transcript ID Bladder Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENSMUST00000087445 0.014±0.00 0.006±0.00 0.029±0.01 0.062±0.04 0.226±0.05 0.171±0.10 0.011±0.01 0.066±0.02 0.133±0.08 0.297±0.35 565.173±184.20

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005200 IEA structural constituent of cytoskeleton
GO:0005525 IEA GTP binding
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0006184 IEA GTP catabolic process
GO:0007017 IEA microtubule-based process
GO:0051258 IEA protein polymerization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000077539 tuba1c-001 protein_coding Danio_rerio 0 1234
ENSDART00000009277 tuba1a-001 protein_coding Danio_rerio 0 1227
ENSDART00000123518 tuba1b-001 protein_coding Danio_rerio 0 1184
ENSDART00000062671 tuba8l-201 protein_coding Danio_rerio 0 1050
ENSDART00000113297 tuba1b-201 protein_coding Danio_rerio 0 252
ENST00000248437 TUBA4A-001 protein_coding Homo_sapiens 0 1339
ENST00000292748 TUBA3FP-002 processed_transcript Homo_sapiens 0 671
ENST00000295766 TUBA1A-002 protein_coding Homo_sapiens 0 1341
ENST00000301071 TUBA1A-001 protein_coding Homo_sapiens 0 1341
ENST00000301072 TUBA1C-001 protein_coding Homo_sapiens 0 1317
ENST00000312988 TUBA3E-001 protein_coding Homo_sapiens 0 1779
ENST00000316027 TUBA8-002 protein_coding Homo_sapiens 0 1050
ENST00000321253 TUBA3D-001 protein_coding Homo_sapiens 0 1807
ENST00000330423 TUBA8-001 protein_coding Homo_sapiens 0 1053
ENST00000332858 TUBA1B-002 retained_intron Homo_sapiens 0 1371
ENST00000336023 TUBA1B-001 protein_coding Homo_sapiens 0 1373
ENST00000392088 TUBA4A-002 protein_coding Homo_sapiens 0 1332
ENST00000400113 TUBA3C-002 protein_coding Homo_sapiens 0 1814
ENST00000409047 TUBA3D-003 processed_transcript Homo_sapiens 0 521
ENST00000410028 TUBA3GP-001 unprocessed_pseudogene Homo_sapiens 0 1325
ENST00000416740 TUBA8-003 protein_coding Homo_sapiens 0 1050
ENST00000422086 TUBA3FP-003 processed_transcript Homo_sapiens 0 671
ENST00000425551 TUBA4A-009 protein_coding Homo_sapiens 0 339
ENST00000427737 TUBA4A-010 protein_coding Homo_sapiens 0 558
ENST00000430114 RP11-480I12.5-001 processed_transcript Homo_sapiens 5e-29 132
ENST00000442739 TUBA3FP-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 924
ENST00000442868 RP11-480I12.5-004 transcribed_unprocessed_pseudogene Homo_sapiens 4.99983e-42 176
ENST00000443294 RP11-480I12.5-002 processed_transcript Homo_sapiens 1e-28 132
ENST00000447205 TUBA4A-003 protein_coding Homo_sapiens 0 460
ENST00000449915 RP11-480I12.5-003 processed_transcript Homo_sapiens 7e-28 128
ENST00000456818 TUBA4A-004 protein_coding Homo_sapiens 0 486
ENST00000462806 TUBA4A-007 retained_intron Homo_sapiens 0 361
ENST00000474897 PEX26-004 nonsense_mediated_decay Homo_sapiens 0 1050
ENST00000475683 TUBA4A-005 retained_intron Homo_sapiens 0 235
ENST00000498660 TUBA4A-006 processed_transcript Homo_sapiens 0 745
ENST00000541364 TUBA1C-002 protein_coding Homo_sapiens 0 1308
ENST00000546918 TUBA1A-011 protein_coding Homo_sapiens 0 239
ENST00000547476 TUBA1B-007 protein_coding Homo_sapiens 0 342
ENST00000547765 TUBA1B-006 nonsense_mediated_decay Homo_sapiens 0 1369
ENST00000547939 TUBA1A-009 protein_coding Homo_sapiens 0 667
ENST00000548363 TUBA1A-015 retained_intron Homo_sapiens 0 359
ENST00000549183 TUBA1C-006 protein_coding Homo_sapiens 0 363
ENST00000549818 TUBA1C-008 nonsense_mediated_decay Homo_sapiens 7e-17 92
ENST00000549870 TUBA1B-011 protein_coding Homo_sapiens 0 364
ENST00000550254 TUBA1A-014 retained_intron Homo_sapiens 0 239
ENST00000550367 TUBA1B-010 protein_coding Homo_sapiens 0 405
ENST00000550767 TUBA1A-006 protein_coding Homo_sapiens 0 1336
ENST00000550811 TUBA1A-010 protein_coding Homo_sapiens 0 196
ENST00000551324 TUBA1B-008 retained_intron Homo_sapiens 0 243
ENST00000552125 TUBA1C-009 nonsense_mediated_decay Homo_sapiens 0 329
ENST00000552448 TUBA1C-003 nonsense_mediated_decay Homo_sapiens 0 1308
ENST00000552924 TUBA1A-008 protein_coding Homo_sapiens 0 399
ENST00000552984 TUBA1B-009 protein_coding Homo_sapiens 0 261
ENST00000569261 TUBA8P2-001 transcribed_processed_pseudogene Homo_sapiens 0 191
ENST00000608634 TUBA8-005 protein_coding Homo_sapiens 0 481
ENST00000618094 TUBA3C-201 protein_coding Homo_sapiens 0 1574

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