C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TNFAIP3 interacting protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087737 Tnip2-001 ENSMUSG00000059866 10090 - 5:34496087-34513991 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087737
Transcript ID Adipose Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087737 4.768±1.58 8.082±0.39 4.079±3.17 7.862±5.38 7.541±4.17 3.071±0.85 3.818±0.70 2.647±1.15 7.788±2.69 1.039±0.20 14.414±6.72 4.392±1.61 2.109±0.95

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003OC CIL_0003OC_0003 CGP 5:34369933-34513997
CIL_0003SI CIL_0003SI_0002 CGP 5:34496087-34563638

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006915 IEA apoptotic process
GO:0006954 IEA inflammatory response
GO:0007249 IDA I-kappaB kinase/NF-kappaB signaling
GO:0019901 ISS protein kinase binding
GO:0023035 IMP CD40 signaling pathway
GO:0031593 IEA polyubiquitin binding
GO:0034134 IMP toll-like receptor 2 signaling pathway
GO:0034138 IMP toll-like receptor 3 signaling pathway
GO:0034162 IMP toll-like receptor 9 signaling pathway
GO:0043032 IMP positive regulation of macrophage activation
GO:0043123 ISS positive regulation of I-kappaB kinase/NF-kappaB signaling
GO:0045944 ISS positive regulation of transcription from RNA polymerase II promoter
GO:0050821 IMP protein stabilization
GO:0050871 IMP positive regulation of B cell activation
GO:0070498 IMP interleukin-1-mediated signaling pathway
GO:0071222 IMP cellular response to lipopolysaccharide
GO:2000352 ISS negative regulation of endothelial cell apoptotic process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000315423 TNIP2-001 protein_coding Homo_sapiens 0 1007
ENST00000424288 RP11-169L17.5-001 processed_pseudogene Homo_sapiens 0 483
ENST00000503235 TNIP2-003 protein_coding Homo_sapiens 0 492
ENST00000505186 TNIP2-006 processed_transcript Homo_sapiens 0 617
ENST00000507686 TNIP2-005 retained_intron Homo_sapiens 0 298
ENST00000510267 TNIP2-002 protein_coding Homo_sapiens 0 813

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